Error Message
ImportError: libOpenGL.so.0: cannot open shared object file: No such file or directory
Stacktrace
def swig_import_helper():
import importlib
pkg = __name__.rpartition('.')[0]
mname = '.'.join((pkg, '_opengl')).lstrip('.')
try:
> return importlib.import_module(mname)
../lib/python3.7/site-packages/ccp4mg/opengl.py:14:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
name = '_opengl', package = None
def import_module(name, package=None):
"""Import a module.
The 'package' argument is required when performing a relative import. It
specifies the package to use as the anchor point from which to resolve the
relative import to an absolute import.
"""
level = 0
if name.startswith('.'):
if not package:
msg = ("the 'package' argument is required to perform a relative "
"import for {!r}")
raise TypeError(msg.format(name))
for character in name:
if character != '.':
break
level += 1
> return _bootstrap._gcd_import(name[level:], package, level)
../lib/python3.7/importlib/__init__.py:127:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
name = '_opengl', package = None, level = 0
> ???
<frozen importlib._bootstrap>:1006:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
name = '_opengl', import_ = <function _gcd_import at 0x7fe030150b00>
> ???
<frozen importlib._bootstrap>:983:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
name = '_opengl', import_ = <function _gcd_import at 0x7fe030150b00>
> ???
<frozen importlib._bootstrap>:967:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
spec = ModuleSpec(name='_opengl', loader=<_frozen_importlib_external.ExtensionFileLoader object at 0x7fdff5029390>, origin='/...ace/CCP4/test-release-linux64/ccp4-8.0/lib/python3.7/site-packages/ccp4mg/lib/_opengl.cpython-37m-x86_64-linux-gnu.so')
> ???
<frozen importlib._bootstrap>:670:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
spec = ModuleSpec(name='_opengl', loader=<_frozen_importlib_external.ExtensionFileLoader object at 0x7fdff5029390>, origin='/...ace/CCP4/test-release-linux64/ccp4-8.0/lib/python3.7/site-packages/ccp4mg/lib/_opengl.cpython-37m-x86_64-linux-gnu.so')
> ???
<frozen importlib._bootstrap>:583:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <_frozen_importlib_external.ExtensionFileLoader object at 0x7fdff5029390>
spec = ModuleSpec(name='_opengl', loader=<_frozen_importlib_external.ExtensionFileLoader object at 0x7fdff5029390>, origin='/...ace/CCP4/test-release-linux64/ccp4-8.0/lib/python3.7/site-packages/ccp4mg/lib/_opengl.cpython-37m-x86_64-linux-gnu.so')
> ???
<frozen importlib._bootstrap_external>:1043:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
f = <built-in function create_dynamic>
args = (ModuleSpec(name='_opengl', loader=<_frozen_importlib_external.ExtensionFileLoader object at 0x7fdff5029390>, origin='...e/CCP4/test-release-linux64/ccp4-8.0/lib/python3.7/site-packages/ccp4mg/lib/_opengl.cpython-37m-x86_64-linux-gnu.so'),)
kwds = {}
> ???
E ImportError: libOpenGL.so.0: cannot open shared object file: No such file or directory
<frozen importlib._bootstrap>:219: ImportError
During handling of the above exception, another exception occurred:
def test_python1():
import os
import sys
import sqlite3 # needed by ccp4i2
import zipfile # needed by ccp4i2
import warnings
import cctbx
import iotbx.pdb
import ccp4io_adaptbx
from scitbx.array_family import flex
print( 'SYMINFO from ccp4io_adaptbx:', os.environ['SYMINFO'])
print( 'sys.version:')
print( sys.version)
ccp4=os.getenv('CCP4')
print( "sys.path: " + "\n ".join(p.replace(ccp4, '\$CCP4') for p in sys.path))
# check that we have modules required by ccp4i2/MG
import suds
from lxml import etree
if sys.version_info[0] >= 3:
from PyQt5 import QtCore, QtGui
from PySide2 import QtGui, QtWidgets, QtCore, QtWebEngineWidgets
else:
from PyQt4 import QtCore, QtGui, QtOpenGL, QtSql, QtWebKit, QtSvg
import numpy
m = numpy.dot(numpy.random.randn(5,5), numpy.random.randn(5,5))
import scipy.cluster.vq
scipy.cluster.vq.kmeans(m, 2)
import sip
from pylab import cm # tries default backend
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg
from matplotlib.backends.backend_pdf import PdfPages
from matplotlib.font_manager import FontProperties
# avoid RuntimeWarning about converter for std::vector<> already registered
with warnings.catch_warnings():
warnings.simplefilter("ignore")
from rdkit import Chem
assert Chem.MolFromSmiles("C1OC1").GetNumAtoms() == 3
# a few modules from ccp4mg
import ccp4mg
import hklfile
> import opengl
../examples/pytest/test_python.py:54:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../lib/python3.7/site-packages/shiboken2/files.dir/shibokensupport/__feature__.py:142: in _import
return original_import(name, *args, **kwargs)
../lib/python3.7/site-packages/ccp4mg/opengl.py:17: in <module>
_opengl = swig_import_helper()
../lib/python3.7/site-packages/ccp4mg/opengl.py:16: in swig_import_helper
return importlib.import_module('_opengl')
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
name = '_opengl', package = None
def import_module(name, package=None):
"""Import a module.
The 'package' argument is required when performing a relative import. It
specifies the package to use as the anchor point from which to resolve the
relative import to an absolute import.
"""
level = 0
if name.startswith('.'):
if not package:
msg = ("the 'package' argument is required to perform a relative "
"import for {!r}")
raise TypeError(msg.format(name))
for character in name:
if character != '.':
break
level += 1
> return _bootstrap._gcd_import(name[level:], package, level)
E ImportError: libOpenGL.so.0: cannot open shared object file: No such file or directory
../lib/python3.7/importlib/__init__.py:127: ImportError
Standard Output
SYMINFO from ccp4io_adaptbx: /home/jenkins/workspace/CCP4/test-release-linux64/ccp4-8.0/lib/python3.7/site-packages/ccp4io/libccp4/data/syminfo.lib
sys.version:
3.7.12 (default, Jan 6 2022, 21:30:12)
[GCC 8.2.1 20180905 (Red Hat 8.2.1-3)]
sys.path: \$CCP4/examples/pytest
\$CCP4/test
\$CCP4/lib/python3.7/site-packages/phaser
\$CCP4/lib/python3.7/site-packages/tntbx
\$CCP4/lib/python3.7/site-packages
\$CCP4/lib/python3.7/site-packages/cctbx_project
\$CCP4/lib/python3.7/site-packages/cctbx_project/boost_adaptbx
\$CCP4/lib/python3.7/site-packages/cctbx_project/libtbx/pythonpath
\$CCP4/lib/python3.7/cctbx/lib
\$CCP4/share/python
\$CCP4/lib/python3.7/site-packages/dxtbx/src
\$CCP4/lib/python37.zip
\$CCP4/lib/python3.7
\$CCP4/lib/python3.7/lib-dynload