test_lorestr

Error Message

assert False

Stacktrace

def test_lorestr():
        import subprocess
        import os
        import platform
        import sys
        import shutil

        cexam = os.getenv('CEXAM')
        ccp4_scr = os.getenv('CCP4_SCR')

        assert cexam is not None
        assert ccp4_scr is not None
        assert os.path.exists(cexam)
        assert os.path.exists(ccp4_scr)

        # Windows compatibility
        setWindows()

        lorestr_pdb1 = os.path.abspath(cexam + os.sep + 'toxd' + os.sep + 'toxd.pdb').replace(os.sep,'/')
        assert os.path.exists(lorestr_pdb1)
        lorestr_f = os.path.abspath(cexam + os.sep + 'toxd' + os.sep + 'toxd.mtz').replace(os.sep,'/')
        assert os.path.exists(lorestr_f)
        lorestr_outputDirectoryName = addSeparator(os.path.abspath(ccp4_scr + os.sep + 'lorestrOutput')).replace(os.sep,'/')
        # if os.path.exists(lorestr_outputDirectoryName):
        #     lorestr_outputDirectoryName = generateNextDirectoryName(lorestr_outputDirectoryName)
        if os.path.exists(lorestr_outputDirectoryName):
            shutil.rmtree(ccp4_scr + os.sep + 'lorestrOutput', ignore_errors=True) #delete output from previous run
        os.makedirs(lorestr_outputDirectoryName)



        lorestr_cryo = False
        lorestr_shifts = ''
        lorestr_reso = 0.0
        lorestr_doXMLprinting = False
        lorestr_xmlFileName = None
        lorestrXMLLog = XMLLog(doPrinting=lorestr_doXMLprinting,
                               xmlFileName=lorestr_xmlFileName,
                               cryo=lorestr_cryo)

        lorestr_molprobityPresent = False
        if isMolprobityPresent():
            lorestr_molprobityPresent = True
        else:
            lorestr_molprobityPresent = False
>       assert  lorestr_molprobityPresent
E       assert False

../lib/python3.9/site-packages/lorestr/test_lorestr.py:52: AssertionError