coot Build Log

Checking out coot 2019-10-16 14:28:02.785
gzip -dc "/home/ccb63/Downloads/devtools/checkout/coot-0.8.9.2.tar.gz" | tar xf -
Applying patch coot-coot-in.patch 2019-10-16 14:28:04.772
patch -p0 < "/home/ccb63/Downloads/devtools/patches/coot-coot-in.patch"
patching file src/coot.in
patching file pyrogen/pyrogen.in
Applying patch coot-syminfo.patch 2019-10-16 14:28:04.811
patch -p0 < "/home/ccb63/Downloads/devtools/patches/coot-syminfo.patch"
patching file src/coot.in
patching file ligand/findligand
patching file ligand/findwaters
Applying patch coot-main-title.patch 2019-10-16 14:28:04.823
patch -p0 < "/home/ccb63/Downloads/devtools/patches/coot-main-title.patch"
patching file src/main.cc
Applying patch coot-unfog-bitmap.patch 2019-10-16 14:28:04.834
patch -p0 < "/home/ccb63/Downloads/devtools/patches/coot-unfog-bitmap.patch"
patching file src/graphics-info.cc
Hunk #2 succeeded at 5109 (offset -1 lines).
patching file src/graphics-ligand-view.cc
Applying patch coot-view.patch 2019-10-16 14:28:04.848
patch -p0 < "/home/ccb63/Downloads/devtools/patches/coot-view.patch"
patching file src/view.cc
Applying patch coot-configure.patch 2019-10-16 14:28:04.859
patch -p1 < "/home/ccb63/Downloads/devtools/patches/coot-configure.patch"
patching file aclocal.m4
patching file configure
patching file Makefile.in
Applying patch coot-cfc.patch 2019-10-16 14:28:04.921
patch -p1 < "/home/ccb63/Downloads/devtools/patches/coot-cfc.patch"
patching file src/cfc.hh
Applying patch coot-configure-png.patch 2019-10-16 14:28:04.979
patch -p0 < "/home/ccb63/Downloads/devtools/patches/coot-configure-png.patch"
patching file configure
Hunk #1 succeeded at 18350 (offset 2 lines).
Applying patch coot-scheme-add-linked-cho-2019-may.patch 2019-10-16 14:28:05.023
patch -p0 < "/home/ccb63/Downloads/devtools/patches/coot-scheme-add-linked-cho-2019-may.patch"
patching file scheme/add-linked-cho.scm
Applying patch curlew-menu-item.patch 2019-10-16 14:28:05.037
patch -p0 < "/home/ccb63/Downloads/devtools/patches/curlew-menu-item.patch"
patching file Makefile.am
patching file Makefile.in
patching file src/Makefile.am
patching file src/Makefile.in
patching file src/c-interface-curlew.cc
patching file src/callbacks.c
Hunk #2 succeeded at 12723 with fuzz 1 (offset -63 lines).
patching file src/callbacks.h
Hunk #1 succeeded at 4640 with fuzz 1 (offset -26 lines).
patching file src/curlew.h
patching file src/curlew.hh
patching file src/fixup-interface.h.sh
patching file src/gtk2-interface.c
patching file src/post-gtk2-glade.sh
Applying patch fix-the-null-ligand-residue-in-pdb-cleanup-serial.patch 2019-10-16 14:28:05.071
patch -p0 < "/home/ccb63/Downloads/devtools/patches/fix-the-null-ligand-residue-in-pdb-cleanup-serial.patch"
(Stripping trailing CRs from patch.)
patching file coot-utils/coot-coord-utils.cc
Hunk #1 succeeded at 3574 (offset -130 lines).
Applying patch coot-molecule-class-info-other.patch 2019-10-16 14:28:05.086
patch -p0 < "/home/ccb63/Downloads/devtools/patches/coot-molecule-class-info-other.patch"
patching file src/molecule-class-info-other.cc
Applying patch coot-refine-alt-conf.patch 2019-10-16 14:28:05.152
patch -p0 < "/home/ccb63/Downloads/devtools/patches/coot-refine-alt-conf.patch"
patching file coot-utils/coot-coord-utils.cc
patching file coot-utils/coot-coord-utils.hh
patching file src/graphics-info-modelling.cc
Applying patch coot-patterson-bug.patch 2019-10-16 14:28:05.187
patch -p0 < "/home/ccb63/Downloads/devtools/patches/coot-patterson-bug.patch"
patching file src/molecule-class-info-patterson.cc
Applying patch coot-https.patch 2019-10-16 14:28:05.207
patch -p0 < "/home/ccb63/Downloads/devtools/patches/coot-https.patch"
patching file python/get_ebi.py
patching file scheme/get-ebi.scm
patching file src/c-interface-network.cc
Configuring coot 2019-10-16 14:28:07.588
/home/ccb63/Downloads/devtools/checkout/coot/configure --prefix /opt/xtal/ccp4-7.0-linux64 --libdir '/opt/xtal/ccp4-7.0-linux64/lib' --with-enhanced-ligand-tools --with-guile --with-python --with-pygtk --with-goocanvas-prefix=/opt/xtal/ccp4-7.0-linux64 --with-guile-gtk --includedir=/opt/xtal/ccp4-7.0-linux64/include/coot RDKIT_CXXFLAGS=-I/opt/xtal/ccp4-7.0-linux64/include/rdkit RDKIT_LIBS='-lRDKitDescriptors -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitForceFieldHelpers -lRDKitForceField -lRDKitMolChemicalFeatures -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDepictor -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitSmilesParse -lRDKitDistGeomHelpers -lRDKitDataStructs -lRDKitRDGeneral -lboost_python -lpython2.7' COOT_BUILD_INFO_STRING='CCP4, Oxfordshire' --enable-silent-rules --enable-shared --disable-static 
configure: WARNING: unrecognized options: --enable-silent-rules
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for library containing strerror... none required
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-CentOS-linux/4.8.2/ld
checking if the linker (/opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-CentOS-linux/4.8.2/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /opt/rh/devtoolset-2/root/usr/bin//nm -B
checking the name lister (/opt/rh/devtoolset-2/root/usr/bin//nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 98304
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-CentOS-linux/4.8.2/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /opt/rh/devtoolset-2/root/usr/bin//nm -B output from gcc object... ok
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) gcc3
checking how to run the C++ preprocessor... g++ -E
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-CentOS-linux/4.8.2/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by g++... /opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-CentOS-linux/4.8.2/ld -m elf_x86_64
checking if the linker (/opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-CentOS-linux/4.8.2/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-CentOS-linux/4.8.2/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/opt/rh/devtoolset-2/root/usr/libexec/gcc/x86_64-CentOS-linux/4.8.2/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking which libtool initialization strategy to adopt... AC-PROG-LIBTOOL
checking what warning flags to pass to the C compiler... -Wall -Wunused
checking what language compliance flags to pass to the C compiler... 
checking what warning flags to pass to the C++ compiler... -Wall -Wno-unused
checking what language compliance flags to pass to the C++ compiler... 
checking sys/stdtypes.h usability... no
checking sys/stdtypes.h presence... no
checking for sys/stdtypes.h... no
checking for OpenMP flag of C compiler... -fopenmp
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GLIB... yes
checking if this is MINGW on Windows... no
checking for SQLite3... yes
checking for mmdb2... yes
checking for ssm... yes
no
checking for non-prefixed single-precision FFTW2 (fftw.h)... yes
checking for Clipper... yes
Congratulations, you are using Guile
checking for guile... /opt/xtal/ccp4-7.0-linux64/bin/guile
checking for guile-config... /opt/xtal/ccp4-7.0-linux64/bin/guile-config
checking for guile-tools... /opt/xtal/ccp4-7.0-linux64/bin/guile-tools
checking libguile compile flags... -I/opt/xtal/ccp4-7.0-linux64/include  -pthread
checking libguile link flags...  -pthread -L/opt/xtal/ccp4-7.0-linux64/lib -lguile -lltdl -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -lgmp -lcrypt -lm -lltdl
checking for Guile-Lib... yes
checking for guile-gui... yes
checking GUILE_VERSION: 1.8
checking for gsl-config... /opt/xtal/ccp4-7.0-linux64/bin/gsl-config
checking for GSL - version >= 1.3... yes
checking for GTK... yes
checking for GNOME_CANVAS... yes
checking for pkg-config... /usr/bin/pkg-config
checking for GtkGLExt - version >= 1.0.0... yes (version 1.2.0)
checking for glLineWidth in -lGL... yes
checking for GLUT... yes
checking for Python... checking Python.h usability... yes
checking Python.h presence... yes
checking for Python.h... yes
Cool, using Python
checking for PYGTK... yes
Good we have pygtk
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory... ${exec_prefix}/lib/python2.7/site-packages
checking for guile-gtk... 
checking for boostlib >= 1.20.0... yes
checking for python2.7... /opt/xtal/ccp4-7.0-linux64/devbin/python
checking for a version of Python >= '2.1.0'... yes
checking for the distutils Python package... yes
checking for Python include path... -I/opt/xtal/ccp4-7.0-linux64/include/python2.7
checking for Python library path... -L/opt/xtal/ccp4-7.0-linux64/lib -lpython2.7
checking for Python site-packages path... /opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages
checking python extra libraries... -lpthread -ldl  -lutil -lm
checking python extra linking flags... -Xlinker -export-dynamic
checking consistency of all components of python development environment... yes
checking whether the Boost::Python library is available... yes
checking whether boost_python is the correct library... yes
checking libglade... no
checking for Goocanvas... yes
Not using MySQL database
checking for curl >= 7.9.7... 7.37.1
checking build type... Linux-x86_64-centos-5-python-gtk2
configure: creating ./config.status
config.status: creating Makefile
config.status: creating macros/Makefile
config.status: creating pdb-templates/Makefile
config.status: creating scheme/Makefile
config.status: creating python/Makefile
config.status: creating compat/Makefile
config.status: creating utils/Makefile
config.status: creating coot-utils/Makefile
config.status: creating protein_db/Makefile
config.status: creating ccp4mg-utils/Makefile
config.status: creating coords/Makefile
config.status: creating db-main/Makefile
config.status: creating density-contour/Makefile
config.status: creating surface/Makefile
config.status: creating coot-surface/Makefile
config.status: creating angles/Makefile
config.status: creating mini-mol/Makefile
config.status: creating skeleton/Makefile
config.status: creating ligand/Makefile
config.status: creating geometry/Makefile
config.status: creating ideal/Makefile
config.status: creating build/Makefile
config.status: creating analysis/Makefile
config.status: creating high-res/Makefile
config.status: creating tw/Makefile
config.status: creating cootaneer/Makefile
config.status: creating cootilus/Makefile
config.status: creating greg-tests/Makefile
config.status: creating python-tests/Makefile
config.status: creating lidia-core/Makefile
config.status: creating libgtkgraph/Makefile
config.status: creating goograph/Makefile
config.status: creating lbg/Makefile
config.status: creating doc/Makefile
config.status: creating src/Makefile
config.status: creating src/coot
config.status: creating python/coot_load_modules.py
config.status: creating data/Makefile
config.status: creating data/rama-coeffs/Makefile
config.status: creating data/cho-models/Makefile
config.status: creating data/cho-acedrg/Makefile
config.status: creating pixmaps/Makefile
config.status: creating pixmaps/icons/Makefile
config.status: creating rama-data/Makefile
config.status: creating man/Makefile
config.status: creating pli/Makefile
config.status: creating pyrogen/Makefile
config.status: creating pyrogen/pyrogen
config.status: creating auxil/Makefile
config.status: creating auxil/catcheck/Makefile
config.status: creating auxil/rama/Makefile
config.status: creating auxil/sec-str/Makefile
config.status: creating auxil/strand-analysis/Makefile
config.status: creating auxil/vectors/Makefile
config.status: creating rcrane/Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --enable-silent-rules
Building coot 2019-10-16 14:28:26.019
make -j 2
Making all in auxil
make[1]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil'
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
Making all in catcheck
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil/catcheck'
make[3]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[3]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil/catcheck'
Making all in rama
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil/rama'
make[3]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[3]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil/rama'
Making all in sec-str
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil/sec-str'
make[3]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[3]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil/sec-str'
Making all in strand-analysis
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil/strand-analysis'
make[3]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[3]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil/strand-analysis'
Making all in vectors
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil/vectors'
make[3]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[3]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil/vectors'
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil'
make[3]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[3]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil'
make[1]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/auxil'
Making all in scheme
make[1]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/scheme'
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/scheme'
Making all in python
make[1]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/python'
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/python'
Making all in pdb-templates
make[1]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/pdb-templates'
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/pdb-templates'
Making all in macros
make[1]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/macros'
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/macros'
Making all in compat
make[1]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/compat'
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
/bin/sh ../libtool --tag=CC   --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/compat     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused  -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c -o getopt.lo /home/ccb63/Downloads/devtools/checkout/coot/compat/getopt.c
/bin/sh ../libtool --tag=CC   --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/compat     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused  -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c -o getopt1.lo /home/ccb63/Downloads/devtools/checkout/coot/compat/getopt1.c
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/compat -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/compat/getopt1.c  -fPIC -DPIC -o .libs/getopt1.o
mv -f .deps/getopt1.Tpo .deps/getopt1.Plo
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/compat -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/compat/getopt.c  -fPIC -DPIC -o .libs/getopt.o
mv -f .deps/getopt.Tpo .deps/getopt.Plo
/bin/sh ../libtool --tag=CC   --mode=link gcc  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libcoot-compat.la -rpath /opt/xtal/ccp4-7.0-linux64/lib getopt.lo getopt1.lo  
libtool: link: gcc -shared  .libs/getopt.o .libs/getopt1.o   -L/opt/xtal/ccp4-7.0-linux64/lib  -mtune=core2 -Wl,--hash-style=both -Wl,--build-id=sha1   -Wl,-soname -Wl,libcoot-compat.so.0 -o .libs/libcoot-compat.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libcoot-compat.so.0" && ln -s "libcoot-compat.so.0.0.0" "libcoot-compat.so.0")
libtool: link: (cd ".libs" && rm -f "libcoot-compat.so" && ln -s "libcoot-compat.so.0.0.0" "libcoot-compat.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-compat.la" && ln -s "../libcoot-compat.la" "libcoot-compat.la" )
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Making all in utils
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils  -I/home/ccb63/Downloads/devtools/checkout/coot    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c -o coot-fasta.lo /home/ccb63/Downloads/devtools/checkout/coot/utils/coot-fasta.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils -I/home/ccb63/Downloads/devtools/checkout/coot -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/utils/coot-utils.cc  -fPIC -DPIC -o .libs/coot-utils.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils -I/home/ccb63/Downloads/devtools/checkout/coot -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/utils/coot-fasta.cc  -fPIC -DPIC -o .libs/coot-fasta.o
mv -f .deps/coot-fasta.Tpo .deps/coot-fasta.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils  -I/home/ccb63/Downloads/devtools/checkout/coot    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c -o atomic-numbers.lo /home/ccb63/Downloads/devtools/checkout/coot/utils/atomic-numbers.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils -I/home/ccb63/Downloads/devtools/checkout/coot -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/utils/atomic-numbers.cc  -fPIC -DPIC -o .libs/atomic-numbers.o
mv -f .deps/atomic-numbers.Tpo .deps/atomic-numbers.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils  -I/home/ccb63/Downloads/devtools/checkout/coot    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c -o gdk-keysyms.lo /home/ccb63/Downloads/devtools/checkout/coot/utils/gdk-keysyms.cc
mv -f .deps/coot-utils.Tpo .deps/coot-utils.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils  -I/home/ccb63/Downloads/devtools/checkout/coot    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT hsv-rgb.lo -MD -MP -MF .deps/hsv-rgb.Tpo -c -o hsv-rgb.lo /home/ccb63/Downloads/devtools/checkout/coot/utils/hsv-rgb.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils -I/home/ccb63/Downloads/devtools/checkout/coot -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT hsv-rgb.lo -MD -MP -MF .deps/hsv-rgb.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/utils/hsv-rgb.cc  -fPIC -DPIC -o .libs/hsv-rgb.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils -I/home/ccb63/Downloads/devtools/checkout/coot -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/utils/gdk-keysyms.cc  -fPIC -DPIC -o .libs/gdk-keysyms.o
mv -f .deps/hsv-rgb.Tpo .deps/hsv-rgb.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils  -I/home/ccb63/Downloads/devtools/checkout/coot    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT dodec.lo -MD -MP -MF .deps/dodec.Tpo -c -o dodec.lo /home/ccb63/Downloads/devtools/checkout/coot/utils/dodec.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils -I/home/ccb63/Downloads/devtools/checkout/coot -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT dodec.lo -MD -MP -MF .deps/dodec.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/utils/dodec.cc  -fPIC -DPIC -o .libs/dodec.o
mv -f .deps/dodec.Tpo .deps/dodec.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils  -I/home/ccb63/Downloads/devtools/checkout/coot    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT win-compat.lo -MD -MP -MF .deps/win-compat.Tpo -c -o win-compat.lo /home/ccb63/Downloads/devtools/checkout/coot/utils/win-compat.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils -I/home/ccb63/Downloads/devtools/checkout/coot -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT win-compat.lo -MD -MP -MF .deps/win-compat.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/utils/win-compat.cc  -fPIC -DPIC -o .libs/win-compat.o
mv -f .deps/win-compat.Tpo .deps/win-compat.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/utils  -I/home/ccb63/Downloads/devtools/checkout/coot    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT threads.lo -MD -MP -MF .deps/threads.Tpo -c -o threads.lo /home/ccb63/Downloads/devtools/checkout/coot/utils/threads.cc
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Making all in protein_db
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/protein_db -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/protein_db/protein_db.cpp  -fPIC -DPIC -o .libs/protein_db.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/protein_db -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/protein_db/protein_db_utils.cpp  -fPIC -DPIC -o .libs/protein_db_utils.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/protein_db -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT rna_db.lo -MD -MP -MF .deps/rna_db.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/protein_db/rna_db.cpp  -fPIC -DPIC -o .libs/rna_db.o
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libtool: link: ( cd ".libs" && rm -f "libcoot-protein-db.la" && ln -s "../libcoot-protein-db.la" "libcoot-protein-db.la" )
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Making all in mini-mol
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/mini-mol -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/mini-mol/mini-mol.cc  -fPIC -DPIC -o .libs/mini-mol.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/mini-mol -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/mini-mol/mini-mol-utils.cc  -fPIC -DPIC -o .libs/mini-mol-utils.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/mini-mol -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/mini-mol/atom-quads.cc  -fPIC -DPIC -o .libs/atom-quads.o
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libtool: link: (cd ".libs" && rm -f "libcoot-mini-mol.so" && ln -s "libcoot-mini-mol.so.0.0.0" "libcoot-mini-mol.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-mini-mol.la" && ln -s "../libcoot-mini-mol.la" "libcoot-mini-mol.la" )
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Making all in geometry
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT protein-geometry.lo -MD -MP -MF .deps/protein-geometry.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/protein-geometry.cc  -fPIC -DPIC -o .libs/protein-geometry.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT protein-geometry-mmdb.lo -MD -MP -MF .deps/protein-geometry-mmdb.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/protein-geometry-mmdb.cc  -fPIC -DPIC -o .libs/protein-geometry-mmdb.o
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"'  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT read-sbase.lo -MD -MP -MF .deps/read-sbase.Tpo -c -o read-sbase.lo /home/ccb63/Downloads/devtools/checkout/coot/geometry/read-sbase.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT read-sbase.lo -MD -MP -MF .deps/read-sbase.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/read-sbase.cc  -fPIC -DPIC -o .libs/read-sbase.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT energy-lib.lo -MD -MP -MF .deps/energy-lib.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/energy-lib.cc  -fPIC -DPIC -o .libs/energy-lib.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT chem_mods.lo -MD -MP -MF .deps/chem_mods.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/chem_mods.cc  -fPIC -DPIC -o .libs/chem_mods.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT srs-interface.lo -MD -MP -MF .deps/srs-interface.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/srs-interface.cc  -fPIC -DPIC -o .libs/srs-interface.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT protein-donor-acceptors.lo -MD -MP -MF .deps/protein-donor-acceptors.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/protein-donor-acceptors.cc  -fPIC -DPIC -o .libs/protein-donor-acceptors.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT lbg-graph.lo -MD -MP -MF .deps/lbg-graph.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/lbg-graph.cc  -fPIC -DPIC -o .libs/lbg-graph.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT dreiding.lo -MD -MP -MF .deps/dreiding.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/dreiding.cc  -fPIC -DPIC -o .libs/dreiding.o
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"'  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT dict-utils.lo -MD -MP -MF .deps/dict-utils.Tpo -c -o dict-utils.lo /home/ccb63/Downloads/devtools/checkout/coot/geometry/dict-utils.cc
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"'  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT cif-parse.lo -MD -MP -MF .deps/cif-parse.Tpo -c -o cif-parse.lo /home/ccb63/Downloads/devtools/checkout/coot/geometry/cif-parse.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT dict-utils.lo -MD -MP -MF .deps/dict-utils.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/dict-utils.cc  -fPIC -DPIC -o .libs/dict-utils.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT cif-parse.lo -MD -MP -MF .deps/cif-parse.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/cif-parse.cc  -fPIC -DPIC -o .libs/cif-parse.o
mv -f .deps/dict-utils.Tpo .deps/dict-utils.Plo
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT main-chain.lo -MD -MP -MF .deps/main-chain.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/main-chain.cc  -fPIC -DPIC -o .libs/main-chain.o
mv -f .deps/main-chain.Tpo .deps/main-chain.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"'  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT residue-and-atom-specs.lo -MD -MP -MF .deps/residue-and-atom-specs.Tpo -c -o residue-and-atom-specs.lo /home/ccb63/Downloads/devtools/checkout/coot/geometry/residue-and-atom-specs.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT residue-and-atom-specs.lo -MD -MP -MF .deps/residue-and-atom-specs.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/residue-and-atom-specs.cc  -fPIC -DPIC -o .libs/residue-and-atom-specs.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT mol-utils-2.lo -MD -MP -MF .deps/mol-utils-2.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/geometry/mol-utils-2.cc  -fPIC -DPIC -o .libs/mol-utils-2.o
mv -f .deps/mol-utils-2.Tpo .deps/mol-utils-2.Plo
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"'  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT compare-dictionaries.o -MD -MP -MF .deps/compare-dictionaries.Tpo -c -o compare-dictionaries.o /home/ccb63/Downloads/devtools/checkout/coot/geometry/compare-dictionaries.cc
mv -f .deps/cif-parse.Tpo .deps/cif-parse.Plo
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"'  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT make-shelx-restraints.o -MD -MP -MF .deps/make-shelx-restraints.Tpo -c -o make-shelx-restraints.o /home/ccb63/Downloads/devtools/checkout/coot/geometry/make-shelx-restraints.cc
mv -f .deps/compare-dictionaries.Tpo .deps/compare-dictionaries.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/geometry  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"'  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT available-comp-id.o -MD -MP -MF .deps/available-comp-id.Tpo -c -o available-comp-id.o /home/ccb63/Downloads/devtools/checkout/coot/geometry/available-comp-id.cc
mv -f .deps/make-shelx-restraints.Tpo .deps/make-shelx-restraints.Po
/bin/sh ../libtool --tag=CXX   --mode=link g++ -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"'  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libcoot-geometry.la -rpath /opt/xtal/ccp4-7.0-linux64/lib protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo dict-utils.lo cif-parse.lo main-chain.lo residue-and-atom-specs.lo mol-utils-2.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -L/opt/xtal/ccp4-7.0-linux64/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2    -L/opt/xtal/ccp4-7.0-linux64/lib -lmmdb2   
libtool: link: g++ -shared -nostdlib /usr/lib/../lib64/crti.o /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtbeginS.o  .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/chem_mods.o .libs/srs-interface.o .libs/protein-donor-acceptors.o .libs/lbg-graph.o .libs/dreiding.o .libs/dict-utils.o .libs/cif-parse.o .libs/main-chain.o .libs/residue-and-atom-specs.o .libs/mol-utils-2.o   -Wl,-rpath -Wl,/home/ccb63/Downloads/devtools/builddir/coot/mini-mol/.libs -Wl,-rpath -Wl,/home/ccb63/Downloads/devtools/builddir/coot/utils/.libs -Wl,-rpath -Wl,/opt/xtal/ccp4-7.0-linux64/lib -L/home/ccb63/Downloads/devtools/builddir/coot/utils/.libs -L/opt/xtal/ccp4-7.0-linux64/lib ../mini-mol/.libs/libcoot-mini-mol.so /home/ccb63/Downloads/devtools/builddir/coot/utils/.libs/libcoot-utils.so ../utils/.libs/libcoot-utils.so -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../.. -lstdc++ -lm -lc -lgcc_s /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtendS.o /usr/lib/../lib64/crtn.o  -mtune=core2 -Wl,--hash-style=both -Wl,--build-id=sha1   -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so.0" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so.0")
libtool: link: (cd ".libs" && rm -f "libcoot-geometry.so" && ln -s "libcoot-geometry.so.0.0.0" "libcoot-geometry.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-geometry.la" && ln -s "../libcoot-geometry.la" "libcoot-geometry.la" )
/bin/sh ../libtool --tag=CXX   --mode=link g++ -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"'  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o coot-compare-dictionaries compare-dictionaries.o ./libcoot-geometry.la ../compat/libcoot-compat.la 
mv -f .deps/available-comp-id.Tpo .deps/available-comp-id.Po
/bin/sh ../libtool --tag=CXX   --mode=link g++ -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"'  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o coot-make-shelx-restraints make-shelx-restraints.o ./libcoot-geometry.la  
libtool: link: g++ -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o .libs/coot-compare-dictionaries compare-dictionaries.o  -L/opt/xtal/ccp4-7.0-linux64/lib ./.libs/libcoot-geometry.so /home/ccb63/Downloads/devtools/builddir/coot/mini-mol/.libs/libcoot-mini-mol.so /home/ccb63/Downloads/devtools/builddir/coot/utils/.libs/libcoot-utils.so -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 ../compat/.libs/libcoot-compat.so -Wl,-rpath -Wl,/opt/xtal/ccp4-7.0-linux64/lib
libtool: link: g++ -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o .libs/coot-make-shelx-restraints make-shelx-restraints.o  -L/opt/xtal/ccp4-7.0-linux64/lib ./.libs/libcoot-geometry.so /home/ccb63/Downloads/devtools/builddir/coot/mini-mol/.libs/libcoot-mini-mol.so /home/ccb63/Downloads/devtools/builddir/coot/utils/.libs/libcoot-utils.so -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-rpath -Wl,/opt/xtal/ccp4-7.0-linux64/lib
/bin/sh ../libtool --tag=CXX   --mode=link g++ -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"'  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o coot-available-comp-id available-comp-id.o ./libcoot-geometry.la  
libtool: link: g++ -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o .libs/coot-available-comp-id available-comp-id.o  -L/opt/xtal/ccp4-7.0-linux64/lib ./.libs/libcoot-geometry.so /home/ccb63/Downloads/devtools/builddir/coot/mini-mol/.libs/libcoot-mini-mol.so /home/ccb63/Downloads/devtools/builddir/coot/utils/.libs/libcoot-utils.so -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -Wl,-rpath -Wl,/opt/xtal/ccp4-7.0-linux64/lib
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Making all in coot-utils
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-coord-utils-nucleotides.lo -MD -MP -MF .deps/coot-coord-utils-nucleotides.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-coord-utils-nucleotides.cc  -fPIC -DPIC -o .libs/coot-coord-utils-nucleotides.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-coord-utils.lo -MD -MP -MF .deps/coot-coord-utils.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-coord-utils.cc  -fPIC -DPIC -o .libs/coot-coord-utils.o
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON  -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-rama.lo -MD -MP -MF .deps/coot-rama.Tpo -c -o coot-rama.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-rama.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-rama.lo -MD -MP -MF .deps/coot-rama.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-rama.cc  -fPIC -DPIC -o .libs/coot-rama.o
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON  -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-h-bonds.lo -MD -MP -MF .deps/coot-h-bonds.Tpo -c -o coot-h-bonds.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-h-bonds.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-h-bonds.lo -MD -MP -MF .deps/coot-h-bonds.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-h-bonds.cc  -fPIC -DPIC -o .libs/coot-h-bonds.o
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON  -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT hole.lo -MD -MP -MF .deps/hole.Tpo -c -o hole.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/hole.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT hole.lo -MD -MP -MF .deps/hole.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/hole.cc  -fPIC -DPIC -o .libs/hole.o
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON  -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT read-sm-cif.lo -MD -MP -MF .deps/read-sm-cif.Tpo -c -o read-sm-cif.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/read-sm-cif.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT read-sm-cif.lo -MD -MP -MF .deps/read-sm-cif.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/read-sm-cif.cc  -fPIC -DPIC -o .libs/read-sm-cif.o
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON  -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT bonded-pairs.lo -MD -MP -MF .deps/bonded-pairs.Tpo -c -o bonded-pairs.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/bonded-pairs.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT bonded-pairs.lo -MD -MP -MF .deps/bonded-pairs.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/bonded-pairs.cc  -fPIC -DPIC -o .libs/bonded-pairs.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-least-squares.lo -MD -MP -MF .deps/coot-least-squares.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-least-squares.cc  -fPIC -DPIC -o .libs/coot-least-squares.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT atom-overlaps.lo -MD -MP -MF .deps/atom-overlaps.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/atom-overlaps.cc  -fPIC -DPIC -o .libs/atom-overlaps.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT plane-utils.lo -MD -MP -MF .deps/plane-utils.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/plane-utils.cc  -fPIC -DPIC -o .libs/plane-utils.o
mv -f .deps/secondary-structure-headers.Tpo .deps/secondary-structure-headers.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON  -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-shelx-ins.lo -MD -MP -MF .deps/coot-shelx-ins.Tpo -c -o coot-shelx-ins.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-shelx-ins.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-shelx-ins.lo -MD -MP -MF .deps/coot-shelx-ins.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-shelx-ins.cc  -fPIC -DPIC -o .libs/coot-shelx-ins.o
mv -f .deps/plane-utils.Tpo .deps/plane-utils.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON  -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-coord-extras.lo -MD -MP -MF .deps/coot-coord-extras.Tpo -c -o coot-coord-extras.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-coord-extras.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-coord-extras.lo -MD -MP -MF .deps/coot-coord-extras.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-coord-extras.cc  -fPIC -DPIC -o .libs/coot-coord-extras.o
mv -f .deps/coot-shelx-ins.Tpo .deps/coot-shelx-ins.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON  -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-coord-lsq.lo -MD -MP -MF .deps/coot-coord-lsq.Tpo -c -o coot-coord-lsq.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-coord-lsq.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-coord-lsq.lo -MD -MP -MF .deps/coot-coord-lsq.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-coord-lsq.cc  -fPIC -DPIC -o .libs/coot-coord-lsq.o
mv -f .deps/coot-coord-extras.Tpo .deps/coot-coord-extras.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON  -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-tree-extras.lo -MD -MP -MF .deps/coot-tree-extras.Tpo -c -o coot-tree-extras.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-tree-extras.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-tree-extras.lo -MD -MP -MF .deps/coot-tree-extras.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-tree-extras.cc  -fPIC -DPIC -o .libs/coot-tree-extras.o
mv -f .deps/coot-coord-lsq.Tpo .deps/coot-coord-lsq.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON  -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT water-coordination.lo -MD -MP -MF .deps/water-coordination.Tpo -c -o water-coordination.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/water-coordination.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT water-coordination.lo -MD -MP -MF .deps/water-coordination.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/water-coordination.cc  -fPIC -DPIC -o .libs/water-coordination.o
mv -f .deps/water-coordination.Tpo .deps/water-coordination.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON  -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT lsq-improve.lo -MD -MP -MF .deps/lsq-improve.Tpo -c -o lsq-improve.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/lsq-improve.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT lsq-improve.lo -MD -MP -MF .deps/lsq-improve.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/lsq-improve.cc  -fPIC -DPIC -o .libs/lsq-improve.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT peak-search.lo -MD -MP -MF .deps/peak-search.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/peak-search.cc  -fPIC -DPIC -o .libs/peak-search.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT peak-search-from-list.lo -MD -MP -MF .deps/peak-search-from-list.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/peak-search-from-list.cc  -fPIC -DPIC -o .libs/peak-search-from-list.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT trim.lo -MD -MP -MF .deps/trim.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/trim.cc  -fPIC -DPIC -o .libs/trim.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT xmap-stats.lo -MD -MP -MF .deps/xmap-stats.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/xmap-stats.cc  -fPIC -DPIC -o .libs/xmap-stats.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT maps-spherical.lo -MD -MP -MF .deps/maps-spherical.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/maps-spherical.cc  -fPIC -DPIC -o .libs/maps-spherical.o
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mv -f .deps/maps-spherical.Tpo .deps/maps-spherical.Plo
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-utils/coot-fffear.cc  -fPIC -DPIC -o .libs/coot-fffear.o
mv -f .deps/coot-map-heavy.Tpo .deps/coot-map-heavy.Plo
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libtool: link: (cd ".libs" && rm -f "libcoot-coord-utils.so.0" && ln -s "libcoot-coord-utils.so.0.0.0" "libcoot-coord-utils.so.0")
libtool: link: (cd ".libs" && rm -f "libcoot-coord-utils.so" && ln -s "libcoot-coord-utils.so.0.0.0" "libcoot-coord-utils.so")
mv -f .deps/coot-fffear.Tpo .deps/coot-fffear.Plo
libtool: link: ( cd ".libs" && rm -f "libcoot-coord-utils.la" && ln -s "../libcoot-coord-utils.la" "libcoot-coord-utils.la" )
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libtool: link: (cd ".libs" && rm -f "libcoot-coord-extras.so.0" && ln -s "libcoot-coord-extras.so.0.0.0" "libcoot-coord-extras.so.0")
libtool: link: (cd ".libs" && rm -f "libcoot-coord-extras.so" && ln -s "libcoot-coord-extras.so.0.0.0" "libcoot-coord-extras.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-coord-extras.la" && ln -s "../libcoot-coord-extras.la" "libcoot-coord-extras.la" )
/bin/sh ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libcoot-map-utils.la -rpath /opt/xtal/ccp4-7.0-linux64/lib coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo libcoot-coord-utils.la -L/opt/xtal/ccp4-7.0-linux64/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2   
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libtool: link: (cd ".libs" && rm -f "libcoot-shelx.so.0" && ln -s "libcoot-shelx.so.0.0.0" "libcoot-shelx.so.0")
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libtool: link: ( cd ".libs" && rm -f "libcoot-shelx.la" && ln -s "../libcoot-shelx.la" "libcoot-shelx.la" )
libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so.0" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so.0")
libtool: link: (cd ".libs" && rm -f "libcoot-map-utils.so" && ln -s "libcoot-map-utils.so.0.0.0" "libcoot-map-utils.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-map-utils.la" && ln -s "../libcoot-map-utils.la" "libcoot-map-utils.la" )
/bin/sh ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libcoot-map-heavy.la -rpath /opt/xtal/ccp4-7.0-linux64/lib coot-map-heavy.lo coot-fffear.lo libcoot-map-utils.la libcoot-coord-utils.la -L/opt/xtal/ccp4-7.0-linux64/lib -lgsl -lgslcblas -lm 
libtool: link: g++ -shared -nostdlib /usr/lib/../lib64/crti.o /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtbeginS.o  .libs/coot-map-heavy.o .libs/coot-fffear.o   -Wl,-rpath -Wl,/home/ccb63/Downloads/devtools/builddir/coot/coot-utils/.libs -Wl,-rpath -Wl,/home/ccb63/Downloads/devtools/builddir/coot/geometry/.libs -Wl,-rpath -Wl,/home/ccb63/Downloads/devtools/builddir/coot/mini-mol/.libs -Wl,-rpath -Wl,/home/ccb63/Downloads/devtools/builddir/coot/utils/.libs -Wl,-rpath -Wl,/opt/xtal/ccp4-7.0-linux64/lib -L/home/ccb63/Downloads/devtools/builddir/coot/coot-utils/.libs -L/home/ccb63/Downloads/devtools/builddir/coot/geometry/.libs -L/home/ccb63/Downloads/devtools/builddir/coot/mini-mol/.libs -L/home/ccb63/Downloads/devtools/builddir/coot/utils/.libs -L/opt/xtal/ccp4-7.0-linux64/lib ./.libs/libcoot-map-utils.so /home/ccb63/Downloads/devtools/builddir/coot/coot-utils/.libs/libcoot-coord-utils.so ./.libs/libcoot-coord-utils.so /home/ccb63/Downloads/devtools/builddir/coot/geometry/.libs/libcoot-geometry.so /home/ccb63/Downloads/devtools/builddir/coot/mini-mol/.libs/libcoot-mini-mol.so /home/ccb63/Downloads/devtools/builddir/coot/utils/.libs/libcoot-utils.so -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../.. -lstdc++ -lm -lc -lgcc_s /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtendS.o /usr/lib/../lib64/crtn.o  -mtune=core2 -Wl,--hash-style=both -Wl,--build-id=sha1   -Wl,-soname -Wl,libcoot-map-heavy.so.0 -o .libs/libcoot-map-heavy.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so.0" && ln -s "libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so.0")
libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so" && ln -s "libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-map-heavy.la" && ln -s "../libcoot-map-heavy.la" "libcoot-map-heavy.la" )
make[1]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/coot-utils'
Making all in surface
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXSphereElement.lo -MD -MP -MF .deps/CXXSphereElement.Tpo -c -o CXXSphereElement.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSphereElement.cpp
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXChargeTable.lo -MD -MP -MF .deps/CXXChargeTable.Tpo -c -o CXXChargeTable.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXChargeTable.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXSphereElement.lo -MD -MP -MF .deps/CXXSphereElement.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSphereElement.cpp  -fPIC -DPIC -o .libs/CXXSphereElement.o
In file included from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.h:22:0,
                 from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSphereElement.cpp:19:
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (unitSphereAtOrigin) 
 ^
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXChargeTable.lo -MD -MP -MF .deps/CXXChargeTable.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXChargeTable.cpp  -fPIC -DPIC -o .libs/CXXChargeTable.o
mv -f .deps/CXXChargeTable.Tpo .deps/CXXChargeTable.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXSphereNode.lo -MD -MP -MF .deps/CXXSphereNode.Tpo -c -o CXXSphereNode.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSphereNode.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXSphereNode.lo -MD -MP -MF .deps/CXXSphereNode.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSphereNode.cpp  -fPIC -DPIC -o .libs/CXXSphereNode.o
mv -f .deps/CXXSphereNode.Tpo .deps/CXXSphereNode.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXCircle.lo -MD -MP -MF .deps/CXXCircle.Tpo -c -o CXXCircle.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXCircle.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXCircle.lo -MD -MP -MF .deps/CXXCircle.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXCircle.cpp  -fPIC -DPIC -o .libs/CXXCircle.o
In file included from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.h:22:0,
                 from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXCircle.cpp:12:
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (unitSphereAtOrigin) 
 ^
mv -f .deps/CXXSphereElement.Tpo .deps/CXXSphereElement.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXSphereTriangle.lo -MD -MP -MF .deps/CXXSphereTriangle.Tpo -c -o CXXSphereTriangle.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSphereTriangle.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXSphereTriangle.lo -MD -MP -MF .deps/CXXSphereTriangle.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSphereTriangle.cpp  -fPIC -DPIC -o .libs/CXXSphereTriangle.o
mv -f .deps/CXXSphereTriangle.Tpo .deps/CXXSphereTriangle.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXCircleNode.lo -MD -MP -MF .deps/CXXCircleNode.Tpo -c -o CXXCircleNode.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXCircleNode.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXCircleNode.lo -MD -MP -MF .deps/CXXCircleNode.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXCircleNode.cpp  -fPIC -DPIC -o .libs/CXXCircleNode.o
mv -f .deps/CXXCircle.Tpo .deps/CXXCircle.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c -o CXXSphereTriangleEdge.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSphereTriangleEdge.cpp
In file included from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.h:22:0,
                 from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXCircleNode.cpp:13:
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (unitSphereAtOrigin) 
 ^
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSphereTriangleEdge.cpp  -fPIC -DPIC -o .libs/CXXSphereTriangleEdge.o
mv -f .deps/CXXSphereTriangleEdge.Tpo .deps/CXXSphereTriangleEdge.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXCoord.lo -MD -MP -MF .deps/CXXCoord.Tpo -c -o CXXCoord.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXCoord.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXCoord.lo -MD -MP -MF .deps/CXXCoord.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXCoord.cpp  -fPIC -DPIC -o .libs/CXXCoord.o
mv -f .deps/CXXCoord.Tpo .deps/CXXCoord.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXSurface.lo -MD -MP -MF .deps/CXXSurface.Tpo -c -o CXXSurface.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXSurface.lo -MD -MP -MF .deps/CXXSurface.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp  -fPIC -DPIC -o .libs/CXXSurface.o
In file included from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.h:22:0,
                 from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp:17:
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (unitSphereAtOrigin) 
 ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp:593:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for default(none) shared(nSelAtoms, SelAtom, cout, unitSphereAtOrigin, vdwBallPntrs, contactMap, ContextSelAtom, splitReentrantProbes) schedule(dynamic, 100) //num_threads(2)
 ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp:597:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical(cout)
 ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp:618:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (mainTriangles)
 ^
mv -f .deps/CXXCircleNode.Tpo .deps/CXXCircleNode.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXCreator.lo -MD -MP -MF .deps/CXXCreator.Tpo -c -o CXXCreator.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXCreator.cpp
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp: In member function ‘int CXXSurface::calculateVDWFromAtoms(mmdb::PManager, int, int, double, double, bool)’:
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp:497:45: warning: deleting object of abstract class type ‘CXXBall’ which has non-virtual destructor will cause undefined behaviour [-Wdelete-non-virtual-dtor]
   if (vdwBallPntrs[i]) delete vdwBallPntrs[i];
                                             ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp:502:54: warning: deleting object of abstract class type ‘CXXBall’ which has non-virtual destructor will cause undefined behaviour [-Wdelete-non-virtual-dtor]
    if (contextBallPntrs[i]) delete contextBallPntrs[i];
                                                      ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp: In member function ‘int CXXSurface::calculateAccessibleFromAtoms(mmdb::PManager, int, int, double, double, bool)’:
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp:549:45: warning: deleting object of abstract class type ‘CXXBall’ which has non-virtual destructor will cause undefined behaviour [-Wdelete-non-virtual-dtor]
   if (vdwBallPntrs[i]) delete vdwBallPntrs[i];
                                             ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp:554:54: warning: deleting object of abstract class type ‘CXXBall’ which has non-virtual destructor will cause undefined behaviour [-Wdelete-non-virtual-dtor]
    if (contextBallPntrs[i]) delete contextBallPntrs[i];
                                                      ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp: In member function ‘int CXXSurface::calculateFromAtoms(mmdb::PManager, int, int, double, double, bool)’:
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp:634:79: warning: deleting object of polymorphic class type ‘CXXAtomBall’ which has non-virtual destructor might cause undefined behaviour [-Wdelete-non-virtual-dtor]
   if (vdwBallPntrs[i]) delete static_cast<const CXXAtomBall *>(vdwBallPntrs[i]);
                                                                               ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp:637:87: warning: deleting object of polymorphic class type ‘CXXAtomBall’ which has non-virtual destructor might cause undefined behaviour [-Wdelete-non-virtual-dtor]
   if (contextBallPntrs[i]) delete static_cast<const CXXAtomBall *>(contextBallPntrs[i]);
                                                                                       ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurface.cpp:641:76: warning: deleting object of polymorphic class type ‘CXXReentrantProbeBall’ which has non-virtual destructor might cause undefined behaviour [-Wdelete-non-virtual-dtor]
        delete static_cast<const CXXReentrantProbeBall *>(reentrantProbes[i]);
                                                                            ^
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXCreator.lo -MD -MP -MF .deps/CXXCreator.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXCreator.cpp  -fPIC -DPIC -o .libs/CXXCreator.o
mv -f .deps/CXXCreator.Tpo .deps/CXXCreator.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXSurfaceVertex.lo -MD -MP -MF .deps/CXXSurfaceVertex.Tpo -c -o CXXSurfaceVertex.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurfaceVertex.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXSurfaceVertex.lo -MD -MP -MF .deps/CXXSurfaceVertex.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSurfaceVertex.cpp  -fPIC -DPIC -o .libs/CXXSurfaceVertex.o
mv -f .deps/CXXSurfaceVertex.Tpo .deps/CXXSurfaceVertex.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXException.lo -MD -MP -MF .deps/CXXException.Tpo -c -o CXXException.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXException.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXException.lo -MD -MP -MF .deps/CXXException.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXException.cpp  -fPIC -DPIC -o .libs/CXXException.o
mv -f .deps/CXXException.Tpo .deps/CXXException.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXTorusElement.lo -MD -MP -MF .deps/CXXTorusElement.Tpo -c -o CXXTorusElement.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXTorusElement.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXTorusElement.lo -MD -MP -MF .deps/CXXTorusElement.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXTorusElement.cpp  -fPIC -DPIC -o .libs/CXXTorusElement.o
mv -f .deps/CXXSurface.Tpo .deps/CXXSurface.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXFFTSolventMap.lo -MD -MP -MF .deps/CXXFFTSolventMap.Tpo -c -o CXXFFTSolventMap.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXFFTSolventMap.cpp
In file included from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.h:22:0,
                 from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXTorusElement.cpp:17:
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (unitSphereAtOrigin) 
 ^
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXFFTSolventMap.lo -MD -MP -MF .deps/CXXFFTSolventMap.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXFFTSolventMap.cpp  -fPIC -DPIC -o .libs/CXXFFTSolventMap.o
mv -f .deps/CXXTorusElement.Tpo .deps/CXXTorusElement.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXTorusNode.lo -MD -MP -MF .deps/CXXTorusNode.Tpo -c -o CXXTorusNode.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXTorusNode.cpp
mv -f .deps/CXXFFTSolventMap.Tpo .deps/CXXFFTSolventMap.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXFortranFile.lo -MD -MP -MF .deps/CXXFortranFile.Tpo -c -o CXXFortranFile.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXFortranFile.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXTorusNode.lo -MD -MP -MF .deps/CXXTorusNode.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXTorusNode.cpp  -fPIC -DPIC -o .libs/CXXTorusNode.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXFortranFile.lo -MD -MP -MF .deps/CXXFortranFile.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXFortranFile.cpp  -fPIC -DPIC -o .libs/CXXFortranFile.o
mv -f .deps/CXXTorusNode.Tpo .deps/CXXTorusNode.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXNewHood.lo -MD -MP -MF .deps/CXXNewHood.Tpo -c -o CXXNewHood.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.cpp
mv -f .deps/CXXFortranFile.Tpo .deps/CXXFortranFile.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXTriangle.lo -MD -MP -MF .deps/CXXTriangle.Tpo -c -o CXXTriangle.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXTriangle.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXTriangle.lo -MD -MP -MF .deps/CXXTriangle.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXTriangle.cpp  -fPIC -DPIC -o .libs/CXXTriangle.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXNewHood.lo -MD -MP -MF .deps/CXXNewHood.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.cpp  -fPIC -DPIC -o .libs/CXXNewHood.o
mv -f .deps/CXXTriangle.Tpo .deps/CXXTriangle.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXNode.lo -MD -MP -MF .deps/CXXNode.Tpo -c -o CXXNode.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNode.cpp
In file included from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.h:22:0,
                 from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.cpp:15:
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (unitSphereAtOrigin) 
 ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.cpp:346:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (circleNodes)
 ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.cpp:377:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (mainTriangles)
 ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.cpp:410:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (mainTriangles)
 ^
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXNode.lo -MD -MP -MF .deps/CXXNode.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNode.cpp  -fPIC -DPIC -o .libs/CXXNode.o
mv -f .deps/CXXNode.Tpo .deps/CXXNode.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXQADSurface.lo -MD -MP -MF .deps/CXXQADSurface.Tpo -c -o CXXQADSurface.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXQADSurface.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXQADSurface.lo -MD -MP -MF .deps/CXXQADSurface.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXQADSurface.cpp  -fPIC -DPIC -o .libs/CXXQADSurface.o
In file included from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.h:22:0,
                 from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXQADSurface.h:11,
                 from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXQADSurface.cpp:1:
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (unitSphereAtOrigin) 
 ^
mv -f .deps/CXXNewHood.Tpo .deps/CXXNewHood.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXBall.lo -MD -MP -MF .deps/CXXBall.Tpo -c -o CXXBall.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXBall.lo -MD -MP -MF .deps/CXXBall.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.cpp  -fPIC -DPIC -o .libs/CXXBall.o
In file included from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.cpp:10:0:
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (unitSphereAtOrigin) 
 ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.cpp:34:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for default(none) shared(delta, nBalls, contactMap, aSurface, raggedEdges, insideOrOutside, ballPntrs) schedule(dynamic, 10) //num_threads(2)
 ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.cpp:83:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for default(none) shared(trimmedBalls, contactMap, insideOrOutside, reformattedEdges, delta, aSurface) schedule(dynamic, 10) //num_threads(2)
 ^
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.cpp:197:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for default(none) shared (binnedballs, ballRadiusX2, limits, binWidth, nBins, balls, contactMap) schedule(dynamic,10) //num_threads(2)
 ^
mv -f .deps/CXXQADSurface.Tpo .deps/CXXQADSurface.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c -o CXXQADSurfaceStaticData.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXQADSurfaceStaticData.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXQADSurfaceStaticData.cpp  -fPIC -DPIC -o .libs/CXXQADSurfaceStaticData.o
mv -f .deps/CXXBall.Tpo .deps/CXXBall.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c -o CXXSpace.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSpace.cpp
In file included from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXNewHood.h:22:0,
                 from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXQADSurface.h:11,
                 from /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXQADSurfaceStaticData.cpp:1:
/home/ccb63/Downloads/devtools/checkout/coot/surface/CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 #pragma omp critical (unitSphereAtOrigin) 
 ^
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXSpace.cpp  -fPIC -DPIC -o .libs/CXXSpace.o
mv -f .deps/CXXQADSurfaceStaticData.Tpo .deps/CXXQADSurfaceStaticData.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface  -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c -o CXXUtils.lo /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXUtils.cpp
mv -f .deps/CXXSpace.Tpo .deps/CXXSpace.Plo
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/surface -I/home/ccb63/Downloads/devtools/checkout/coot/coot-utils -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/surface/CXXUtils.cpp  -fPIC -DPIC -o .libs/CXXUtils.o
mv -f .deps/CXXUtils.Tpo .deps/CXXUtils.Plo
/bin/sh ../libtool --tag=CXX   --mode=link g++  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libcoot-electrostatics.la -rpath /opt/xtal/ccp4-7.0-linux64/lib CXXSphereElement.lo CXXChargeTable.lo CXXSphereNode.lo CXXCircle.lo CXXSphereTriangle.lo CXXCircleNode.lo CXXSphereTriangleEdge.lo CXXCoord.lo CXXSurface.lo CXXCreator.lo CXXSurfaceVertex.lo CXXException.lo CXXTorusElement.lo CXXFFTSolventMap.lo CXXTorusNode.lo CXXFortranFile.lo CXXNewHood.lo CXXTriangle.lo CXXNode.lo CXXQADSurface.lo CXXBall.lo CXXQADSurfaceStaticData.lo CXXSpace.lo CXXUtils.lo -L/opt/xtal/ccp4-7.0-linux64/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2   -lrfftw -lfftw -L/opt/xtal/ccp4-7.0-linux64/lib -lmmdb2    
libtool: link: g++ -shared -nostdlib /usr/lib/../lib64/crti.o /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtbeginS.o  .libs/CXXSphereElement.o .libs/CXXChargeTable.o .libs/CXXSphereNode.o .libs/CXXCircle.o .libs/CXXSphereTriangle.o .libs/CXXCircleNode.o .libs/CXXSphereTriangleEdge.o .libs/CXXCoord.o .libs/CXXSurface.o .libs/CXXCreator.o .libs/CXXSurfaceVertex.o .libs/CXXException.o .libs/CXXTorusElement.o .libs/CXXFFTSolventMap.o .libs/CXXTorusNode.o .libs/CXXFortranFile.o .libs/CXXNewHood.o .libs/CXXTriangle.o .libs/CXXNode.o .libs/CXXQADSurface.o .libs/CXXBall.o .libs/CXXQADSurfaceStaticData.o .libs/CXXSpace.o .libs/CXXUtils.o   -L/opt/xtal/ccp4-7.0-linux64/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lrfftw -lfftw -lmmdb2 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../.. -lstdc++ -lm -lc -lgcc_s /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtendS.o /usr/lib/../lib64/crtn.o  -mtune=core2 -Wl,--hash-style=both -Wl,--build-id=sha1   -Wl,-soname -Wl,libcoot-electrostatics.so.0 -o .libs/libcoot-electrostatics.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libcoot-electrostatics.so.0" && ln -s "libcoot-electrostatics.so.0.0.0" "libcoot-electrostatics.so.0")
libtool: link: (cd ".libs" && rm -f "libcoot-electrostatics.so" && ln -s "libcoot-electrostatics.so.0.0.0" "libcoot-electrostatics.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-electrostatics.la" && ln -s "../libcoot-electrostatics.la" "libcoot-electrostatics.la" )
make[1]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/surface'
Making all in coot-surface
make[1]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/coot-surface'
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-surface  -I/home/ccb63/Downloads/devtools/checkout/coot -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c -o coot-surface.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-surface/coot-surface.cc
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-surface  -I/home/ccb63/Downloads/devtools/checkout/coot -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c -o rgbreps.lo /home/ccb63/Downloads/devtools/checkout/coot/coot-surface/rgbreps.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-surface -I/home/ccb63/Downloads/devtools/checkout/coot -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-surface/coot-surface.cc  -fPIC -DPIC -o .libs/coot-surface.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coot-surface -I/home/ccb63/Downloads/devtools/checkout/coot -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coot-surface/rgbreps.cc  -fPIC -DPIC -o .libs/rgbreps.o
mv -f .deps/rgbreps.Tpo .deps/rgbreps.Plo
mv -f .deps/coot-surface.Tpo .deps/coot-surface.Plo
/bin/sh ../libtool --tag=CXX   --mode=link g++  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libcoot-surface.la -rpath /opt/xtal/ccp4-7.0-linux64/lib coot-surface.lo rgbreps.lo ../surface/libcoot-electrostatics.la -L/opt/xtal/ccp4-7.0-linux64/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2   -L/opt/xtal/ccp4-7.0-linux64/lib -lmmdb2   -lglut  -lXmu -pthread -L/opt/xtal/ccp4-7.0-linux64/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lrt -lglib-2.0   -lGL 
libtool: link: g++ -shared -nostdlib /usr/lib/../lib64/crti.o /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtbeginS.o  .libs/coot-surface.o .libs/rgbreps.o   -Wl,-rpath -Wl,/home/ccb63/Downloads/devtools/builddir/coot/surface/.libs -Wl,-rpath -Wl,/opt/xtal/ccp4-7.0-linux64/lib -L/opt/xtal/ccp4-7.0-linux64/lib ../surface/.libs/libcoot-electrostatics.so -lrfftw -lfftw -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lglut -lXmu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lrt -lglib-2.0 -lGL -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../.. -lstdc++ -lm -lc -lgcc_s /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtendS.o /usr/lib/../lib64/crtn.o  -mtune=core2 -Wl,--hash-style=both -Wl,--build-id=sha1 -pthread   -pthread -Wl,-soname -Wl,libcoot-surface.so.0 -o .libs/libcoot-surface.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libcoot-surface.so.0" && ln -s "libcoot-surface.so.0.0.0" "libcoot-surface.so.0")
libtool: link: (cd ".libs" && rm -f "libcoot-surface.so" && ln -s "libcoot-surface.so.0.0.0" "libcoot-surface.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-surface.la" && ln -s "../libcoot-surface.la" "libcoot-surface.la" )
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Making all in lidia-core
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lidia-core -I/home/ccb63/Downloads/devtools/checkout/coot -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT chemical-feature-clusters.lo -MD -MP -MF .deps/chemical-feature-clusters.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/lidia-core/chemical-feature-clusters.cc  -fPIC -DPIC -o .libs/chemical-feature-clusters.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lidia-core -I/home/ccb63/Downloads/devtools/checkout/coot -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DUSE_SQLITE3 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT atom-types.lo -MD -MP -MF .deps/atom-types.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/lidia-core/atom-types.cc  -fPIC -DPIC -o .libs/atom-types.o
mv -f .deps/atom-types.Tpo .deps/atom-types.Plo
mv -f .deps/chemical-feature-clusters.Tpo .deps/chemical-feature-clusters.Plo
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libtool: link: (cd ".libs" && rm -f "libcoot-lidia-core.so" && ln -s "libcoot-lidia-core.so.0.0.0" "libcoot-lidia-core.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-lidia-core.la" && ln -s "../libcoot-lidia-core.la" "libcoot-lidia-core.la" )
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coords -I/home/ccb63/Downloads/devtools/checkout/coot -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT Cartesian.lo -MD -MP -MF .deps/Cartesian.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coords/Cartesian.cc  -fPIC -DPIC -o .libs/Cartesian.o
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mv -f .deps/mmdb.Tpo .deps/mmdb.Plo
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coords -I/home/ccb63/Downloads/devtools/checkout/coot -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT phenix-geo.lo -MD -MP -MF .deps/phenix-geo.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coords/phenix-geo.cc  -fPIC -DPIC -o .libs/phenix-geo.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/coords -I/home/ccb63/Downloads/devtools/checkout/coot -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT loop-path.lo -MD -MP -MF .deps/loop-path.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/coords/loop-path.cc  -fPIC -DPIC -o .libs/loop-path.o
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/bin/sh ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"'  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libcoot-coords.la -rpath /opt/xtal/ccp4-7.0-linux64/lib Bond_lines.lo Cartesian.lo cos-sin.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo phenix-geo-bonds.lo loop-path.lo ../geometry/libcoot-geometry.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/opt/xtal/ccp4-7.0-linux64/lib -lmmdb2   -lRDKitDescriptors -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitForceFieldHelpers -lRDKitForceField -lRDKitMolChemicalFeatures -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDepictor -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitSmilesParse -lRDKitDistGeomHelpers -lRDKitDataStructs -lRDKitRDGeneral -lboost_python -lpython2.7 
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libtool: link: (cd ".libs" && rm -f "libcoot-coords.so" && ln -s "libcoot-coords.so.0.0.0" "libcoot-coords.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-coords.la" && ln -s "../libcoot-coords.la" "libcoot-coords.la" )
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Making all in angles
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/angles -DCLIPPER_HAS_TOP8000 -g -O1 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/angles/AngleInfo.cc  -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/angles -DCLIPPER_HAS_TOP8000 -g -O1 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/angles/AngleInfo-angle-torsions-autogen.cc  -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o
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mv -f .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Plo
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/angles -DCLIPPER_HAS_TOP8000 -g -O1 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/angles/AngleInfo-theta_2-autogen.cc  -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o
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libtool: link: (cd ".libs" && rm -f "libcoot-AngleInfo.so" && ln -s "libcoot-AngleInfo.so.0.0.0" "libcoot-AngleInfo.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-AngleInfo.la" && ln -s "../libcoot-AngleInfo.la" "libcoot-AngleInfo.la" )
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Making all in skeleton
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/skeleton -I/home/ccb63/Downloads/devtools/checkout/coot -DMMDB_HAS_LINK_DISTANCE -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/skeleton/dm-utils.cc  -fPIC -DPIC -o .libs/dm-utils.o
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Making all in ccp4mg-utils
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils/cartesian.cc  -fPIC -DPIC -o .libs/cartesian.o
mv -f .deps/cartesian.Tpo .deps/cartesian.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils  -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG   -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c -o matrix.lo /home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils/matrix.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils/matrix.cc  -fPIC -DPIC -o .libs/matrix.o
mv -f .deps/matrix.Tpo .deps/matrix.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils  -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG   -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c -o quat.lo /home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils/quat.cc
mv -f .deps/mgtree.Tpo .deps/mgtree.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils  -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG   -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c -o ppmutil.lo /home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils/ppmutil.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils/quat.cc  -fPIC -DPIC -o .libs/quat.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils/ppmutil.cc  -fPIC -DPIC -o .libs/ppmutil.o
mv -f .deps/quat.Tpo .deps/quat.Plo
/home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils/ppmutil.cc: In member function ‘void image_info::readpng(const char*)’:
/home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils/ppmutil.cc:2508:79: warning: ‘palette’ may be used uninitialized in this function [-Wmaybe-uninitialized]
         pixels[i*width*colourspace+j*colourspace] = palette[row_pointers[i][j]].red;
                                                                               ^
/home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils/ppmutil.cc:2512:9: warning: ‘num_trans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
         if(row_pointers[i][j]<num_trans){
         ^
/home/ccb63/Downloads/devtools/checkout/coot/ccp4mg-utils/ppmutil.cc:2513:86: warning: ‘trans_alpha’ may be used uninitialized in this function [-Wmaybe-uninitialized]
          pixels[i*width*colourspace+j*colourspace+3] = trans_alpha[row_pointers[i][j]];
                                                                                      ^
mv -f .deps/ppmutil.Tpo .deps/ppmutil.Plo
/bin/sh ../libtool --tag=CXX   --mode=link g++  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libccp4mg-utils.la -rpath /opt/xtal/ccp4-7.0-linux64/lib geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo -lpng 
libtool: link: g++ -shared -nostdlib /usr/lib/../lib64/crti.o /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtbeginS.o  .libs/geomutil.o .libs/mgtree.o .libs/cartesian.o .libs/matrix.o .libs/quat.o .libs/ppmutil.o   -L/opt/xtal/ccp4-7.0-linux64/lib -lpng -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../.. -lstdc++ -lm -lc -lgcc_s /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtendS.o /usr/lib/../lib64/crtn.o  -mtune=core2 -Wl,--hash-style=both -Wl,--build-id=sha1   -Wl,-soname -Wl,libccp4mg-utils.so.0 -o .libs/libccp4mg-utils.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libccp4mg-utils.so.0" && ln -s "libccp4mg-utils.so.0.0.0" "libccp4mg-utils.so.0")
libtool: link: (cd ".libs" && rm -f "libccp4mg-utils.so" && ln -s "libccp4mg-utils.so.0.0.0" "libccp4mg-utils.so")
libtool: link: ( cd ".libs" && rm -f "libccp4mg-utils.la" && ln -s "../libccp4mg-utils.la" "libccp4mg-utils.la" )
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Making all in density-contour
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/density-contour  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c -o Vectors.lo /home/ccb63/Downloads/devtools/checkout/coot/density-contour/Vectors.cpp
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/density-contour  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c -o CIsoSurface.lo /home/ccb63/Downloads/devtools/checkout/coot/density-contour/CIsoSurface.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/density-contour -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/density-contour/Vectors.cpp  -fPIC -DPIC -o .libs/Vectors.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/density-contour -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/density-contour/CIsoSurface.cpp  -fPIC -DPIC -o .libs/CIsoSurface.o
mv -f .deps/Vectors.Tpo .deps/Vectors.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/density-contour  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c -o density-contour-triangles.lo /home/ccb63/Downloads/devtools/checkout/coot/density-contour/density-contour-triangles.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/density-contour -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/density-contour/density-contour-triangles.cc  -fPIC -DPIC -o .libs/density-contour-triangles.o
mv -f .deps/density-contour-triangles.Tpo .deps/density-contour-triangles.Plo
mv -f .deps/CIsoSurface.Tpo .deps/CIsoSurface.Plo
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g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/analysis  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DMMDB_HAS_LINK_DISTANCE   -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT bfactan.o -MD -MP -MF .deps/bfactan.Tpo -c -o bfactan.o /home/ccb63/Downloads/devtools/checkout/coot/analysis/bfactan.cc
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT distortion.lo -MD -MP -MF .deps/distortion.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/distortion.cc  -fPIC -DPIC -o .libs/distortion.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT chirals.lo -MD -MP -MF .deps/chirals.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/chirals.cc  -fPIC -DPIC -o .libs/chirals.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT flanking.lo -MD -MP -MF .deps/flanking.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/flanking.cc  -fPIC -DPIC -o .libs/flanking.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT regularize-minimol.lo -MD -MP -MF .deps/regularize-minimol.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/regularize-minimol.cc  -fPIC -DPIC -o .libs/regularize-minimol.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT lograma.lo -MD -MP -MF .deps/lograma.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/lograma.cpp  -fPIC -DPIC -o .libs/lograma.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT extra-restraints-kk.lo -MD -MP -MF .deps/extra-restraints-kk.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/extra-restraints-kk.cc  -fPIC -DPIC -o .libs/extra-restraints-kk.o
mv -f .deps/lograma.Tpo .deps/lograma.Plo
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT simple-restraint-kk.lo -MD -MP -MF .deps/simple-restraint-kk.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/simple-restraint-kk.cc  -fPIC -DPIC -o .libs/simple-restraint-kk.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT torsion-bonds.lo -MD -MP -MF .deps/torsion-bonds.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/torsion-bonds.cc  -fPIC -DPIC -o .libs/torsion-bonds.o
mv -f .deps/extra-restraints-kk.Tpo .deps/extra-restraints-kk.Plo
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-compare-residues.lo -MD -MP -MF .deps/coot-compare-residues.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/coot-compare-residues.cc  -fPIC -DPIC -o .libs/coot-compare-residues.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT link-restraints.lo -MD -MP -MF .deps/link-restraints.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/link-restraints.cc  -fPIC -DPIC -o .libs/link-restraints.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT parallel-planes.lo -MD -MP -MF .deps/parallel-planes.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/parallel-planes.cc  -fPIC -DPIC -o .libs/parallel-planes.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT trans-peptide.lo -MD -MP -MF .deps/trans-peptide.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/trans-peptide.cc  -fPIC -DPIC -o .libs/trans-peptide.o
mv -f .deps/link-restraints.Tpo .deps/link-restraints.Plo
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT model-bond-deltas.lo -MD -MP -MF .deps/model-bond-deltas.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/model-bond-deltas.cc  -fPIC -DPIC -o .libs/model-bond-deltas.o
mv -f .deps/trans-peptide.Tpo .deps/trans-peptide.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE  -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include  -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT write-png.lo -MD -MP -MF .deps/write-png.Tpo -c -o write-png.lo /home/ccb63/Downloads/devtools/checkout/coot/ideal/write-png.cc
mv -f .deps/model-bond-deltas.Tpo .deps/model-bond-deltas.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE  -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include  -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT zo-rama.lo -MD -MP -MF .deps/zo-rama.Tpo -c -o zo-rama.lo /home/ccb63/Downloads/devtools/checkout/coot/ideal/zo-rama.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT write-png.lo -MD -MP -MF .deps/write-png.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/write-png.cc  -fPIC -DPIC -o .libs/write-png.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT zo-rama.lo -MD -MP -MF .deps/zo-rama.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/zo-rama.cc  -fPIC -DPIC -o .libs/zo-rama.o
mv -f .deps/write-png.Tpo .deps/write-png.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE  -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include  -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT crankshaft.lo -MD -MP -MF .deps/crankshaft.Tpo -c -o crankshaft.lo /home/ccb63/Downloads/devtools/checkout/coot/ideal/crankshaft.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT crankshaft.lo -MD -MP -MF .deps/crankshaft.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/crankshaft.cc  -fPIC -DPIC -o .libs/crankshaft.o
mv -f .deps/zo-rama.Tpo .deps/zo-rama.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE  -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include  -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT phi-psi.lo -MD -MP -MF .deps/phi-psi.Tpo -c -o phi-psi.lo /home/ccb63/Downloads/devtools/checkout/coot/ideal/phi-psi.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT phi-psi.lo -MD -MP -MF .deps/phi-psi.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ideal/phi-psi.cc  -fPIC -DPIC -o .libs/phi-psi.o
mv -f .deps/phi-psi.Tpo .deps/phi-psi.Plo
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ideal  -I/home/ccb63/Downloads/devtools/checkout/coot -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE  -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include  -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT mini-rsr.o -MD -MP -MF .deps/mini-rsr.Tpo -c -o mini-rsr.o /home/ccb63/Downloads/devtools/checkout/coot/ideal/mini-rsr.cc
mv -f .deps/crankshaft.Tpo .deps/crankshaft.Plo
/bin/sh ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include  -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libcoot-ideal.la -rpath /opt/xtal/ccp4-7.0-linux64/lib simple-restraint.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la -L/opt/xtal/ccp4-7.0-linux64/lib -lmmdb2   -L/opt/xtal/ccp4-7.0-linux64/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2   -L/opt/xtal/ccp4-7.0-linux64/lib -lgsl -lgslcblas -lm -lpng 
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libtool: link: (cd ".libs" && rm -f "libcoot-ideal.so.0" && ln -s "libcoot-ideal.so.0.0.0" "libcoot-ideal.so.0")
mv -f .deps/mini-rsr.Tpo .deps/mini-rsr.Po
libtool: link: (cd ".libs" && rm -f "libcoot-ideal.so" && ln -s "libcoot-ideal.so.0.0.0" "libcoot-ideal.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-ideal.la" && ln -s "../libcoot-ideal.la" "libcoot-ideal.la" )
/bin/sh ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include  -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -L/opt/xtal/ccp4-7.0-linux64/lib -lmmdb2   -L/opt/xtal/ccp4-7.0-linux64/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2    -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o mini-rsr-bin mini-rsr.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la  -lRDKitDescriptors -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitForceFieldHelpers -lRDKitForceField -lRDKitMolChemicalFeatures -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDepictor -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitSmilesParse -lRDKitDistGeomHelpers -lRDKitDataStructs -lRDKitRDGeneral -lboost_python -lpython2.7 -L/opt/xtal/ccp4-7.0-linux64/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2   -L/opt/xtal/ccp4-7.0-linux64/lib -lmmdb2   -L/opt/xtal/ccp4-7.0-linux64/lib -lgsl -lgslcblas -lm 
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Making all in ligand
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/residue_by_phi_psi.cc  -fPIC -DPIC -o .libs/residue_by_phi_psi.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT wiggly-ligand.lo -MD -MP -MF .deps/wiggly-ligand.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/wiggly-ligand.cc  -fPIC -DPIC -o .libs/wiggly-ligand.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT monomer-utils.lo -MD -MP -MF .deps/monomer-utils.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/monomer-utils.cc  -fPIC -DPIC -o .libs/monomer-utils.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT dunbrack.lo -MD -MP -MF .deps/dunbrack.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/dunbrack.cc  -fPIC -DPIC -o .libs/dunbrack.o
mv -f .deps/wiggly-ligand.Tpo .deps/wiggly-ligand.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT chi-angles-autogen.lo -MD -MP -MF .deps/chi-angles-autogen.Tpo -c -o chi-angles-autogen.lo /home/ccb63/Downloads/devtools/checkout/coot/ligand/chi-angles-autogen.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT chi-angles-autogen.lo -MD -MP -MF .deps/chi-angles-autogen.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/chi-angles-autogen.cc  -fPIC -DPIC -o .libs/chi-angles-autogen.o
mv -f .deps/dunbrack.Tpo .deps/dunbrack.Plo
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT chi-angles.lo -MD -MP -MF .deps/chi-angles.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/chi-angles.cc  -fPIC -DPIC -o .libs/chi-angles.o
mv -f .deps/chi-angles-autogen.Tpo .deps/chi-angles-autogen.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT helix-placement.lo -MD -MP -MF .deps/helix-placement.Tpo -c -o helix-placement.lo /home/ccb63/Downloads/devtools/checkout/coot/ligand/helix-placement.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT helix-placement.lo -MD -MP -MF .deps/helix-placement.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/helix-placement.cc  -fPIC -DPIC -o .libs/helix-placement.o
mv -f .deps/chi-angles.Tpo .deps/chi-angles.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT fast-ss-search.lo -MD -MP -MF .deps/fast-ss-search.Tpo -c -o fast-ss-search.lo /home/ccb63/Downloads/devtools/checkout/coot/ligand/fast-ss-search.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT fast-ss-search.lo -MD -MP -MF .deps/fast-ss-search.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/fast-ss-search.cc  -fPIC -DPIC -o .libs/fast-ss-search.o
mv -f .deps/helix-placement.Tpo .deps/helix-placement.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT rigid-body.lo -MD -MP -MF .deps/rigid-body.Tpo -c -o rigid-body.lo /home/ccb63/Downloads/devtools/checkout/coot/ligand/rigid-body.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT rigid-body.lo -MD -MP -MF .deps/rigid-body.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/rigid-body.cc  -fPIC -DPIC -o .libs/rigid-body.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT ideal-rna.lo -MD -MP -MF .deps/ideal-rna.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/ideal-rna.cc  -fPIC -DPIC -o .libs/ideal-rna.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT richardson-rotamer.lo -MD -MP -MF .deps/richardson-rotamer.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/richardson-rotamer.cc  -fPIC -DPIC -o .libs/richardson-rotamer.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT richardson-rotamers.lo -MD -MP -MF .deps/richardson-rotamers.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/richardson-rotamers.cc  -fPIC -DPIC -o .libs/richardson-rotamers.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT rotamer.lo -MD -MP -MF .deps/rotamer.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/rotamer.cc  -fPIC -DPIC -o .libs/rotamer.o
mv -f .deps/richardson-rotamers.Tpo .deps/richardson-rotamers.Plo
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT torsion-general.lo -MD -MP -MF .deps/torsion-general.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/torsion-general.cc  -fPIC -DPIC -o .libs/torsion-general.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT rotamer-tables.lo -MD -MP -MF .deps/rotamer-tables.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/rotamer-tables.cc  -fPIC -DPIC -o .libs/rotamer-tables.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT primitive-chi-angles.lo -MD -MP -MF .deps/primitive-chi-angles.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/primitive-chi-angles.cc  -fPIC -DPIC -o .libs/primitive-chi-angles.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT dipole.lo -MD -MP -MF .deps/dipole.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/dipole.cc  -fPIC -DPIC -o .libs/dipole.o
mv -f .deps/primitive-chi-angles.Tpo .deps/primitive-chi-angles.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT base-pairing.lo -MD -MP -MF .deps/base-pairing.Tpo -c -o base-pairing.lo /home/ccb63/Downloads/devtools/checkout/coot/ligand/base-pairing.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT base-pairing.lo -MD -MP -MF .deps/base-pairing.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/base-pairing.cc  -fPIC -DPIC -o .libs/base-pairing.o
mv -f .deps/base-pairing.Tpo .deps/base-pairing.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT backrub-rotamer.lo -MD -MP -MF .deps/backrub-rotamer.Tpo -c -o backrub-rotamer.lo /home/ccb63/Downloads/devtools/checkout/coot/ligand/backrub-rotamer.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT backrub-rotamer.lo -MD -MP -MF .deps/backrub-rotamer.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/backrub-rotamer.cc  -fPIC -DPIC -o .libs/backrub-rotamer.o
mv -f .deps/dipole.Tpo .deps/dipole.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT trace.lo -MD -MP -MF .deps/trace.Tpo -c -o trace.lo /home/ccb63/Downloads/devtools/checkout/coot/ligand/trace.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT trace.lo -MD -MP -MF .deps/trace.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/trace.cc  -fPIC -DPIC -o .libs/trace.o
/home/ccb63/Downloads/devtools/checkout/coot/ligand/trace.cc:353:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for shared(scores)   
 ^
/home/ccb63/Downloads/devtools/checkout/coot/ligand/trace.cc:1201:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for // currently we write out the fragments, not store them
 ^
mv -f .deps/backrub-rotamer.Tpo .deps/backrub-rotamer.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT trace-2.lo -MD -MP -MF .deps/trace-2.Tpo -c -o trace-2.lo /home/ccb63/Downloads/devtools/checkout/coot/ligand/trace-2.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT trace-2.lo -MD -MP -MF .deps/trace-2.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/trace-2.cc  -fPIC -DPIC -o .libs/trace-2.o
mv -f .deps/trace-2.Tpo .deps/trace-2.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT multi-peptide.lo -MD -MP -MF .deps/multi-peptide.Tpo -c -o multi-peptide.lo /home/ccb63/Downloads/devtools/checkout/coot/ligand/multi-peptide.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT multi-peptide.lo -MD -MP -MF .deps/multi-peptide.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/multi-peptide.cc  -fPIC -DPIC -o .libs/multi-peptide.o
mv -f .deps/trace.Tpo .deps/trace.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT ligands-db.lo -MD -MP -MF .deps/ligands-db.Tpo -c -o ligands-db.lo /home/ccb63/Downloads/devtools/checkout/coot/ligand/ligands-db.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DUSE_SQLITE3 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT ligands-db.lo -MD -MP -MF .deps/ligands-db.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/ligand/ligands-db.cc  -fPIC -DPIC -o .libs/ligands-db.o
mv -f .deps/multi-peptide.Tpo .deps/multi-peptide.Plo
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT find-ligand.o -MD -MP -MF .deps/find-ligand.Tpo -c -o find-ligand.o /home/ccb63/Downloads/devtools/checkout/coot/ligand/find-ligand.cc
mv -f .deps/ligands-db.Tpo .deps/ligands-db.Plo
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT find-waters.o -MD -MP -MF .deps/find-waters.Tpo -c -o find-waters.o /home/ccb63/Downloads/devtools/checkout/coot/ligand/find-waters.cc
mv -f .deps/find-waters.Tpo .deps/find-waters.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/ligand  -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GSL -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT make-ligands-db.o -MD -MP -MF .deps/make-ligands-db.Tpo -c -o make-ligands-db.o /home/ccb63/Downloads/devtools/checkout/coot/ligand/make-ligands-db.cc
mv -f .deps/find-ligand.Tpo .deps/find-ligand.Po
/bin/sh ../libtool --tag=CXX   --mode=link g++  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libcoot-ligand.la -rpath /opt/xtal/ccp4-7.0-linux64/lib ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -L/opt/xtal/ccp4-7.0-linux64/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2   -L/opt/xtal/ccp4-7.0-linux64/lib -lmmdb2   -L/opt/xtal/ccp4-7.0-linux64/lib -lsqlite3   -lRDKitDescriptors -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitForceFieldHelpers -lRDKitForceField -lRDKitMolChemicalFeatures -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDepictor -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitSmilesParse -lRDKitDistGeomHelpers -lRDKitDataStructs -lRDKitRDGeneral -lboost_python -lpython2.7 
mv -f .deps/make-ligands-db.Tpo .deps/make-ligands-db.Po
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libtool: link: (cd ".libs" && rm -f "libcoot-ligand.so.0" && ln -s "libcoot-ligand.so.0.0.0" "libcoot-ligand.so.0")
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libtool: link: ( cd ".libs" && rm -f "libcoot-ligand.la" && ln -s "../libcoot-ligand.la" "libcoot-ligand.la" )
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/bin/sh ../libtool --tag=CXX   --mode=link g++  -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DUSE_SQLITE3    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o findwaters-bin find-waters.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-shelx.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la  -lRDKitDescriptors -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitForceFieldHelpers -lRDKitForceField -lRDKitMolChemicalFeatures -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDepictor -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitSmilesParse -lRDKitDistGeomHelpers -lRDKitDataStructs -lRDKitRDGeneral -lboost_python -lpython2.7 -L/opt/xtal/ccp4-7.0-linux64/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2   -L/opt/xtal/ccp4-7.0-linux64/lib -lmmdb2   -L/opt/xtal/ccp4-7.0-linux64/lib -lgsl -lgslcblas -lm 
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make[1]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/python-tests'
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
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make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/python-tests'
Making all in tw
make[1]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/tw'
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/tw   -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16      -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c -o tw.lo /home/ccb63/Downloads/devtools/checkout/coot/tw/tw.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/tw -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/tw/tw.cc  -fPIC -DPIC -o .libs/tw.o
mv -f .deps/tw.Tpo .deps/tw.Plo
/bin/sh ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libcoot-tw.la -rpath /opt/xtal/ccp4-7.0-linux64/lib tw.lo  
libtool: link: g++ -shared -nostdlib /usr/lib/../lib64/crti.o /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtbeginS.o  .libs/tw.o   -L/opt/xtal/ccp4-7.0-linux64/lib -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../.. -lstdc++ -lm -lc -lgcc_s /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtendS.o /usr/lib/../lib64/crtn.o  -mtune=core2 -Wl,--hash-style=both -Wl,--build-id=sha1   -Wl,-soname -Wl,libcoot-tw.so.0 -o .libs/libcoot-tw.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libcoot-tw.so.0" && ln -s "libcoot-tw.so.0.0.0" "libcoot-tw.so.0")
libtool: link: (cd ".libs" && rm -f "libcoot-tw.so" && ln -s "libcoot-tw.so.0.0.0" "libcoot-tw.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-tw.la" && ln -s "../libcoot-tw.la" "libcoot-tw.la" )
make[1]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/tw'
Making all in libgtkgraph
make[1]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/libgtkgraph'
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
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/bin/sh ../libtool --tag=CC   --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include   -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused  -MT annotation.lo -MD -MP -MF .deps/annotation.Tpo -c -o annotation.lo /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/annotation.c
/bin/sh ../libtool --tag=CC   --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include   -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused  -MT polar_util.lo -MD -MP -MF .deps/polar_util.Tpo -c -o polar_util.lo /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/polar_util.c
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused -MT polar_util.lo -MD -MP -MF .deps/polar_util.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/polar_util.c  -fPIC -DPIC -o .libs/polar_util.o
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused -MT annotation.lo -MD -MP -MF .deps/annotation.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/annotation.c  -fPIC -DPIC -o .libs/annotation.o
mv -f .deps/polar_util.Tpo .deps/polar_util.Plo
/bin/sh ../libtool --tag=CC   --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include   -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused  -MT trace.lo -MD -MP -MF .deps/trace.Tpo -c -o trace.lo /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/trace.c
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused -MT trace.lo -MD -MP -MF .deps/trace.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/trace.c  -fPIC -DPIC -o .libs/trace.o
mv -f .deps/annotation.Tpo .deps/annotation.Plo
/bin/sh ../libtool --tag=CC   --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include   -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused  -MT axis.lo -MD -MP -MF .deps/axis.Tpo -c -o axis.lo /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/axis.c
mv -f .deps/trace.Tpo .deps/trace.Plo
/bin/sh ../libtool --tag=CC   --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include   -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused  -MT gtkgraph.lo -MD -MP -MF .deps/gtkgraph.Tpo -c -o gtkgraph.lo /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/gtkgraph.c
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused -MT gtkgraph.lo -MD -MP -MF .deps/gtkgraph.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/gtkgraph.c  -fPIC -DPIC -o .libs/gtkgraph.o
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused -MT axis.lo -MD -MP -MF .deps/axis.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/axis.c  -fPIC -DPIC -o .libs/axis.o
mv -f .deps/axis.Tpo .deps/axis.Plo
/bin/sh ../libtool --tag=CC   --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include   -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused  -MT polar.lo -MD -MP -MF .deps/polar.Tpo -c -o polar.lo /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/polar.c
mv -f .deps/gtkgraph.Tpo .deps/gtkgraph.Plo
/bin/sh ../libtool --tag=CC   --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include   -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16     -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused  -MT smith.lo -MD -MP -MF .deps/smith.Tpo -c -o smith.lo /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/smith.c
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused -MT smith.lo -MD -MP -MF .deps/smith.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/smith.c  -fPIC -DPIC -o .libs/smith.o
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused -MT polar.lo -MD -MP -MF .deps/polar.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/libgtkgraph/polar.c  -fPIC -DPIC -o .libs/polar.o
mv -f .deps/smith.Tpo .deps/smith.Plo
mv -f .deps/polar.Tpo .deps/polar.Plo
/bin/sh ../libtool --tag=CC   --mode=link gcc  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libcoot-gtkgraph.la -rpath /opt/xtal/ccp4-7.0-linux64/lib annotation.lo polar_util.lo trace.lo axis.lo gtkgraph.lo polar.lo smith.lo -pthread -L/opt/xtal/ccp4-7.0-linux64/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lrt -lglib-2.0   -lm 
libtool: link: gcc -shared  .libs/annotation.o .libs/polar_util.o .libs/trace.o .libs/axis.o .libs/gtkgraph.o .libs/polar.o .libs/smith.o   -L/opt/xtal/ccp4-7.0-linux64/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lrt -lglib-2.0 -lm  -mtune=core2 -Wl,--hash-style=both -Wl,--build-id=sha1 -pthread   -pthread -Wl,-soname -Wl,libcoot-gtkgraph.so.0 -o .libs/libcoot-gtkgraph.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libcoot-gtkgraph.so.0" && ln -s "libcoot-gtkgraph.so.0.0.0" "libcoot-gtkgraph.so.0")
libtool: link: (cd ".libs" && rm -f "libcoot-gtkgraph.so" && ln -s "libcoot-gtkgraph.so.0.0.0" "libcoot-gtkgraph.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-gtkgraph.la" && ln -s "../libcoot-gtkgraph.la" "libcoot-gtkgraph.la" )
make[1]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot/libgtkgraph'
Making all in lbg
make[1]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/lbg'
make[2]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot'
make[2]: Leaving directory `/home/ccb63/Downloads/devtools/builddir/coot'
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT lbg.lo -MD -MP -MF .deps/lbg.Tpo -c -o lbg.lo /home/ccb63/Downloads/devtools/checkout/coot/lbg/lbg.cc
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT lbg-flev.lo -MD -MP -MF .deps/lbg-flev.Tpo -c -o lbg-flev.lo /home/ccb63/Downloads/devtools/checkout/coot/lbg/lbg-flev.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT lbg.lo -MD -MP -MF .deps/lbg.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/lbg/lbg.cc  -fPIC -DPIC -o .libs/lbg.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT lbg-flev.lo -MD -MP -MF .deps/lbg-flev.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/lbg/lbg-flev.cc  -fPIC -DPIC -o .libs/lbg-flev.o
mv -f .deps/lbg-flev.Tpo .deps/lbg-flev.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c -o wmolecule.lo /home/ccb63/Downloads/devtools/checkout/coot/lbg/wmolecule.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/lbg/wmolecule.cc  -fPIC -DPIC -o .libs/wmolecule.o
mv -f .deps/wmolecule.Tpo .deps/wmolecule.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c -o lbg-search.lo /home/ccb63/Downloads/devtools/checkout/coot/lbg/lbg-search.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/lbg/lbg-search.cc  -fPIC -DPIC -o .libs/lbg-search.o
mv -f .deps/lbg-search.Tpo .deps/lbg-search.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c -o residue-circles.lo /home/ccb63/Downloads/devtools/checkout/coot/lbg/residue-circles.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/lbg/residue-circles.cc  -fPIC -DPIC -o .libs/residue-circles.o
mv -f .deps/residue-circles.Tpo .deps/residue-circles.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT lbg-drag-and-drop.lo -MD -MP -MF .deps/lbg-drag-and-drop.Tpo -c -o lbg-drag-and-drop.lo /home/ccb63/Downloads/devtools/checkout/coot/lbg/lbg-drag-and-drop.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT lbg-drag-and-drop.lo -MD -MP -MF .deps/lbg-drag-and-drop.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/lbg/lbg-drag-and-drop.cc  -fPIC -DPIC -o .libs/lbg-drag-and-drop.o
mv -f .deps/lbg.Tpo .deps/lbg.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT qed-interface.lo -MD -MP -MF .deps/qed-interface.Tpo -c -o qed-interface.lo /home/ccb63/Downloads/devtools/checkout/coot/lbg/qed-interface.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT qed-interface.lo -MD -MP -MF .deps/qed-interface.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/lbg/qed-interface.cc  -fPIC -DPIC -o .libs/qed-interface.o
mv -f .deps/lbg-drag-and-drop.Tpo .deps/lbg-drag-and-drop.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT alerts.lo -MD -MP -MF .deps/alerts.Tpo -c -o alerts.lo /home/ccb63/Downloads/devtools/checkout/coot/lbg/alerts.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT alerts.lo -MD -MP -MF .deps/alerts.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/lbg/alerts.cc  -fPIC -DPIC -o .libs/alerts.o
mv -f .deps/alerts.Tpo .deps/alerts.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT alerts-list.lo -MD -MP -MF .deps/alerts-list.Tpo -c -o alerts-list.lo /home/ccb63/Downloads/devtools/checkout/coot/lbg/alerts-list.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT alerts-list.lo -MD -MP -MF .deps/alerts-list.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/lbg/alerts-list.cc  -fPIC -DPIC -o .libs/alerts-list.o
mv -f .deps/qed-interface.Tpo .deps/qed-interface.Plo
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT qed-properties.lo -MD -MP -MF .deps/qed-properties.Tpo -c -o qed-properties.lo /home/ccb63/Downloads/devtools/checkout/coot/lbg/qed-properties.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT qed-properties.lo -MD -MP -MF .deps/qed-properties.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/lbg/qed-properties.cc  -fPIC -DPIC -o .libs/qed-properties.o
mv -f .deps/alerts-list.Tpo .deps/alerts-list.Plo
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT lidia-main.o -MD -MP -MF .deps/lidia-main.Tpo -c -o lidia-main.o /home/ccb63/Downloads/devtools/checkout/coot/lbg/lidia-main.cc
mv -f .deps/qed-properties.Tpo .deps/qed-properties.Plo
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/lbg  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCLIPPER_HAS_TOP8000  -DMMDB_HAS_LINK_DISTANCE  -DMAKE_ENHANCED_LIGAND_TOOLS -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK    -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT lbg-callbacks-outer.o -MD -MP -MF .deps/lbg-callbacks-outer.Tpo -c -o lbg-callbacks-outer.o /home/ccb63/Downloads/devtools/checkout/coot/lbg/lbg-callbacks-outer.cc
mv -f .deps/lidia-main.Tpo .deps/lidia-main.Po
/bin/sh ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused   -L/opt/xtal/ccp4-7.0-linux64/lib -s -Wl,--hash-style=both -Wl,--build-id=sha1 -o libcoot-lidia.la -rpath /opt/xtal/ccp4-7.0-linux64/lib lbg.lo lbg-flev.lo wmolecule.lo lbg-search.lo residue-circles.lo lbg-drag-and-drop.lo qed-interface.lo alerts.lo alerts-list.lo qed-properties.lo ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/opt/xtal/ccp4-7.0-linux64/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2    -L/opt/xtal/ccp4-7.0-linux64/lib -lmmdb2   -L/opt/xtal/ccp4-7.0-linux64/lib -lgsl -lgslcblas -lm -lRDKitDescriptors -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitForceFieldHelpers -lRDKitForceField -lRDKitMolChemicalFeatures -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDepictor -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitSmilesParse -lRDKitDistGeomHelpers -lRDKitDataStructs -lRDKitRDGeneral -lboost_python -lpython2.7  -lboost_python -L/opt/xtal/ccp4-7.0-linux64/lib -lgoocanvas -pthread -L/opt/xtal/ccp4-7.0-linux64/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lrt -lglib-2.0   -lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic -lutil 
libtool: link: g++ -shared -nostdlib /usr/lib/../lib64/crti.o /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtbeginS.o  .libs/lbg.o .libs/lbg-flev.o .libs/wmolecule.o .libs/lbg-search.o .libs/residue-circles.o .libs/lbg-drag-and-drop.o .libs/qed-interface.o .libs/alerts.o .libs/alerts-list.o .libs/qed-properties.o   -Wl,-rpath -Wl,/home/ccb63/Downloads/devtools/builddir/coot/geometry/.libs -Wl,-rpath -Wl,/home/ccb63/Downloads/devtools/builddir/coot/mini-mol/.libs -Wl,-rpath -Wl,/home/ccb63/Downloads/devtools/builddir/coot/lidia-core/.libs -Wl,-rpath -Wl,/home/ccb63/Downloads/devtools/builddir/coot/coot-utils/.libs -Wl,-rpath -Wl,/home/ccb63/Downloads/devtools/builddir/coot/utils/.libs -Wl,-rpath -Wl,/opt/xtal/ccp4-7.0-linux64/lib -L/home/ccb63/Downloads/devtools/builddir/coot/geometry/.libs -L/home/ccb63/Downloads/devtools/builddir/coot/mini-mol/.libs -L/home/ccb63/Downloads/devtools/builddir/coot/coot-utils/.libs -L/home/ccb63/Downloads/devtools/builddir/coot/utils/.libs -L/opt/xtal/ccp4-7.0-linux64/lib ../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so ../lidia-core/.libs/libcoot-lidia-core.so /home/ccb63/Downloads/devtools/builddir/coot/coot-utils/.libs/libcoot-coord-utils.so /home/ccb63/Downloads/devtools/builddir/coot/geometry/.libs/libcoot-geometry.so /home/ccb63/Downloads/devtools/builddir/coot/mini-mol/.libs/libcoot-mini-mol.so /home/ccb63/Downloads/devtools/builddir/coot/utils/.libs/libcoot-utils.so -lsqlite3 ../utils/.libs/libcoot-utils.so -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -lgsl -lgslcblas -lRDKitDescriptors -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitForceFieldHelpers -lRDKitForceField -lRDKitMolChemicalFeatures -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDepictor -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitSmilesParse -lRDKitDistGeomHelpers -lRDKitDataStructs -lRDKitRDGeneral -lboost_python -lgoocanvas -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lrt -lglib-2.0 -lpython2.7 -lpthread -ldl -lutil -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/../../.. -lstdc++ -lm -lc -lgcc_s /opt/rh/devtoolset-2/root/usr/lib/gcc/x86_64-CentOS-linux/4.8.2/crtendS.o /usr/lib/../lib64/crtn.o  -mtune=core2 -Wl,--hash-style=both -Wl,--build-id=sha1 -pthread -Wl,-export-dynamic   -pthread -Wl,-soname -Wl,libcoot-lidia.so.0 -o .libs/libcoot-lidia.so.0.0.0
mv -f .deps/lbg-callbacks-outer.Tpo .deps/lbg-callbacks-outer.Po
libtool: link: (cd ".libs" && rm -f "libcoot-lidia.so.0" && ln -s "libcoot-lidia.so.0.0.0" "libcoot-lidia.so.0")
libtool: link: (cd ".libs" && rm -f "libcoot-lidia.so" && ln -s "libcoot-lidia.so.0.0.0" "libcoot-lidia.so")
libtool: link: ( cd ".libs" && rm -f "libcoot-lidia.la" && ln -s "../libcoot-lidia.la" "libcoot-lidia.la" )
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/cootilus -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT nautilus-join.lo -MD -MP -MF .deps/nautilus-join.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/cootilus/nautilus-join.cpp  -fPIC -DPIC -o .libs/nautilus-join.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/cootilus -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT nautilus-ss-find.lo -MD -MP -MF .deps/nautilus-ss-find.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/cootilus/nautilus-ss-find.cpp  -fPIC -DPIC -o .libs/nautilus-ss-find.o
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/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/cootilus  -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE    -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT nautilus-target.lo -MD -MP -MF .deps/nautilus-target.Tpo -c -o nautilus-target.lo /home/ccb63/Downloads/devtools/checkout/coot/cootilus/nautilus-target.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/cootilus -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT nautilus-target.lo -MD -MP -MF .deps/nautilus-target.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/cootilus/nautilus-target.cpp  -fPIC -DPIC -o .libs/nautilus-target.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/cootilus -DCLIPPER_HAS_TOP8000 -DMMDB_HAS_LINK_DISTANCE -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT cootilus-build.lo -MD -MP -MF .deps/cootilus-build.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/cootilus/cootilus-build.cpp  -fPIC -DPIC -o .libs/cootilus-build.o
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libtool: link: (cd ".libs" && rm -f "libcootilus.so" && ln -s "libcootilus.so.0.0.0" "libcootilus.so")
libtool: link: ( cd ".libs" && rm -f "libcootilus.la" && ln -s "../libcootilus.la" "libcootilus.la" )
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Making all in goograph
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/goograph -I/home/ccb63/Downloads/devtools/checkout/coot -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT goograph.lo -MD -MP -MF .deps/goograph.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/goograph/goograph.cc  -fPIC -DPIC -o .libs/goograph.o
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Making all in pli
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Making all in pyrogen
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libtool: link: ( cd ".libs" && rm -f "libcoot_py_restraints.la" && ln -s "../libcoot_py_restraints.la" "libcoot_py_restraints.la" )
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mv -f .deps/restraints-boost.Tpo .deps/restraints-boost.Plo
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make[1]: Entering directory `/home/ccb63/Downloads/devtools/builddir/coot/src'
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-embedded.lo -MD -MP -MF .deps/coot-embedded.Tpo -c -o coot-embedded.lo /home/ccb63/Downloads/devtools/checkout/coot/src/coot-embedded.cc
/bin/sh ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-extended.lo -MD -MP -MF .deps/coot-extended.Tpo -c -o coot-extended.lo /home/ccb63/Downloads/devtools/checkout/coot/src/coot-extended.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include -pthread -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DCOOT_USE_GTK2_INTERFACE -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DUSE_SQLITE3 -I/opt/xtal/ccp4-7.0-linux64/include -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DPACKAGE_LOCALE_DIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot/locale\" -DPKGPYTHONDIR=\"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot\" -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-centos-5-python-gtk2\" "-DCOOT_BUILD_INFO_STRING=\"CCP4, Oxfordshire\"" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-extended.lo -MD -MP -MF .deps/coot-extended.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/src/coot-extended.cc  -fPIC -DPIC -o .libs/coot-extended.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" "-DPACKAGE_STRING=\"coot 0.8.9.2\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 "-DHAVE_BOOST=/**/" -DHAVE_PYTHON=\"2.7\" "-DHAVE_BOOST_PYTHON=/**/" -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include -pthread -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DCOOT_USE_GTK2_INTERFACE -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -DUSE_SQLITE3 -I/opt/xtal/ccp4-7.0-linux64/include -DPKGDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot\" -DPACKAGE_LOCALE_DIR=\"/opt/xtal/ccp4-7.0-linux64/share/coot/locale\" -DPKGPYTHONDIR=\"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot\" -DDATADIR=\"/opt/xtal/ccp4-7.0-linux64/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-centos-5-python-gtk2\" "-DCOOT_BUILD_INFO_STRING=\"CCP4, Oxfordshire\"" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused -MT coot-embedded.lo -MD -MP -MF .deps/coot-embedded.Tpo -c /home/ccb63/Downloads/devtools/checkout/coot/src/coot-embedded.cc  -fPIC -DPIC -o .libs/coot-embedded.o
mv -f .deps/coot-extended.Tpo .deps/coot-extended.Plo
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT fix-nomenclature.o -MD -MP -MF .deps/fix-nomenclature.Tpo -c -o fix-nomenclature.o /home/ccb63/Downloads/devtools/checkout/coot/src/fix-nomenclature.cc
mv -f .deps/fix-nomenclature.Tpo .deps/fix-nomenclature.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-nomenclature.o -MD -MP -MF .deps/coot-nomenclature.Tpo -c -o coot-nomenclature.o /home/ccb63/Downloads/devtools/checkout/coot/src/coot-nomenclature.cc
mv -f .deps/coot-nomenclature.Tpo .deps/coot-nomenclature.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o /home/ccb63/Downloads/devtools/checkout/coot/src/main.cc
mv -f .deps/coot-embedded.Tpo .deps/coot-embedded.Plo
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT boot-python.o -MD -MP -MF .deps/boot-python.Tpo -c -o boot-python.o /home/ccb63/Downloads/devtools/checkout/coot/src/boot-python.cc
mv -f .deps/boot-python.Tpo .deps/boot-python.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT atom-overlaps.o -MD -MP -MF .deps/atom-overlaps.Tpo -c -o atom-overlaps.o /home/ccb63/Downloads/devtools/checkout/coot/src/atom-overlaps.cc
mv -f .deps/main.Tpo .deps/main.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT git-revision-count.o -MD -MP -MF .deps/git-revision-count.Tpo -c -o git-revision-count.o git-revision-count.cc
mv -f .deps/git-revision-count.Tpo .deps/git-revision-count.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT scm-boot-guile.o -MD -MP -MF .deps/scm-boot-guile.Tpo -c -o scm-boot-guile.o /home/ccb63/Downloads/devtools/checkout/coot/src/scm-boot-guile.cc
mv -f .deps/atom-overlaps.Tpo .deps/atom-overlaps.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-analysis.o -MD -MP -MF .deps/c-interface-analysis.Tpo -c -o c-interface-analysis.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-analysis.cc
mv -f .deps/scm-boot-guile.Tpo .deps/scm-boot-guile.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-bonds.o -MD -MP -MF .deps/c-interface-bonds.Tpo -c -o c-interface-bonds.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-bonds.cc
mv -f .deps/c-interface-analysis.Tpo .deps/c-interface-analysis.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-build.o -MD -MP -MF .deps/c-interface-build.Tpo -c -o c-interface-build.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-build.cc
mv -f .deps/c-interface-bonds.Tpo .deps/c-interface-bonds.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-build-morph.o -MD -MP -MF .deps/c-interface-build-morph.Tpo -c -o c-interface-build-morph.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-build-morph.cc
mv -f .deps/c-interface-build-morph.Tpo .deps/c-interface-build-morph.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-build-main-chain.o -MD -MP -MF .deps/c-interface-build-main-chain.Tpo -c -o c-interface-build-main-chain.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-build-main-chain.cc
mv -f .deps/c-interface-build.Tpo .deps/c-interface-build.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-build-side-chain.o -MD -MP -MF .deps/c-interface-build-side-chain.Tpo -c -o c-interface-build-side-chain.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-build-side-chain.cc
mv -f .deps/c-interface-build-main-chain.Tpo .deps/c-interface-build-main-chain.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-build-symmetry.o -MD -MP -MF .deps/c-interface-build-symmetry.Tpo -c -o c-interface-build-symmetry.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-build-symmetry.cc
mv -f .deps/c-interface-build-symmetry.Tpo .deps/c-interface-build-symmetry.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-build-gui.o -MD -MP -MF .deps/c-interface-build-gui.Tpo -c -o c-interface-build-gui.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-build-gui.cc
mv -f .deps/c-interface-build-side-chain.Tpo .deps/c-interface-build-side-chain.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-curlew.o -MD -MP -MF .deps/c-interface-curlew.Tpo -c -o c-interface-curlew.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-curlew.cc
mv -f .deps/c-interface-curlew.Tpo .deps/c-interface-curlew.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-database.o -MD -MP -MF .deps/c-interface-database.Tpo -c -o c-interface-database.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-database.cc
mv -f .deps/c-interface-database.Tpo .deps/c-interface-database.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-gui.o -MD -MP -MF .deps/c-interface-gui.Tpo -c -o c-interface-gui.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-gui.cc
mv -f .deps/c-interface-build-gui.Tpo .deps/c-interface-build-gui.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-gtk2.o -MD -MP -MF .deps/c-interface-gtk2.Tpo -c -o c-interface-gtk2.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-gtk2.cc
mv -f .deps/c-interface-gtk2.Tpo .deps/c-interface-gtk2.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-info.o -MD -MP -MF .deps/c-interface-info.Tpo -c -o c-interface-info.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-info.cc
mv -f .deps/c-interface-gui.Tpo .deps/c-interface-gui.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-kk.o -MD -MP -MF .deps/c-interface-kk.Tpo -c -o c-interface-kk.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-kk.cc
mv -f .deps/c-interface-kk.Tpo .deps/c-interface-kk.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-ligands.o -MD -MP -MF .deps/c-interface-ligands.Tpo -c -o c-interface-ligands.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-ligands.cc
mv -f .deps/c-interface-info.Tpo .deps/c-interface-info.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-ligands-gui.o -MD -MP -MF .deps/c-interface-ligands-gui.Tpo -c -o c-interface-ligands-gui.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-ligands-gui.cc
mv -f .deps/c-interface-ligands-gui.Tpo .deps/c-interface-ligands-gui.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-maps.o -MD -MP -MF .deps/c-interface-maps.Tpo -c -o c-interface-maps.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-maps.cc
mv -f .deps/c-interface-ligands.Tpo .deps/c-interface-ligands.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-mmdb.o -MD -MP -MF .deps/c-interface-mmdb.Tpo -c -o c-interface-mmdb.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-mmdb.cc
mv -f .deps/c-interface-mmdb.Tpo .deps/c-interface-mmdb.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-mogul.o -MD -MP -MF .deps/c-interface-mogul.Tpo -c -o c-interface-mogul.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-mogul.cc
mv -f .deps/c-interface-maps.Tpo .deps/c-interface-maps.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-mogul-scripting.o -MD -MP -MF .deps/c-interface-mogul-scripting.Tpo -c -o c-interface-mogul-scripting.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-mogul-scripting.cc
mv -f .deps/c-interface-mogul-scripting.Tpo .deps/c-interface-mogul-scripting.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-mutate.o -MD -MP -MF .deps/c-interface-mutate.Tpo -c -o c-interface-mutate.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-mutate.cc
mv -f .deps/c-interface-mogul.Tpo .deps/c-interface-mogul.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-ncs.o -MD -MP -MF .deps/c-interface-ncs.Tpo -c -o c-interface-ncs.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-ncs.cc
mv -f .deps/c-interface-mutate.Tpo .deps/c-interface-mutate.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-network.o -MD -MP -MF .deps/c-interface-network.Tpo -c -o c-interface-network.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-network.cc
mv -f .deps/c-interface-ncs.Tpo .deps/c-interface-ncs.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-nucleotides.o -MD -MP -MF .deps/c-interface-nucleotides.Tpo -c -o c-interface-nucleotides.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-nucleotides.cc
mv -f .deps/c-interface-network.Tpo .deps/c-interface-network.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-python.o -MD -MP -MF .deps/c-interface-python.Tpo -c -o c-interface-python.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-python.cc
mv -f .deps/c-interface-nucleotides.Tpo .deps/c-interface-nucleotides.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-pisa.o -MD -MP -MF .deps/c-interface-pisa.Tpo -c -o c-interface-pisa.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-pisa.cc
mv -f .deps/c-interface-python.Tpo .deps/c-interface-python.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-pisa-gui.o -MD -MP -MF .deps/c-interface-pisa-gui.Tpo -c -o c-interface-pisa-gui.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-pisa-gui.cc
mv -f .deps/c-interface-pisa-gui.Tpo .deps/c-interface-pisa-gui.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-preferences.o -MD -MP -MF .deps/c-interface-preferences.Tpo -c -o c-interface-preferences.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-preferences.cc
mv -f .deps/c-interface-pisa.Tpo .deps/c-interface-pisa.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-refine.o -MD -MP -MF .deps/c-interface-refine.Tpo -c -o c-interface-refine.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-refine.cc
mv -f .deps/c-interface-preferences.Tpo .deps/c-interface-preferences.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-residues.o -MD -MP -MF .deps/c-interface-residues.Tpo -c -o c-interface-residues.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-residues.cc
mv -f .deps/c-interface-refine.Tpo .deps/c-interface-refine.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-refmac.o -MD -MP -MF .deps/c-interface-refmac.Tpo -c -o c-interface-refmac.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-refmac.cc
mv -f .deps/c-interface-residues.Tpo .deps/c-interface-residues.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-scm.o -MD -MP -MF .deps/c-interface-scm.Tpo -c -o c-interface-scm.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-scm.cc
mv -f .deps/c-interface-refmac.Tpo .deps/c-interface-refmac.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-sequence.o -MD -MP -MF .deps/c-interface-sequence.Tpo -c -o c-interface-sequence.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-sequence.cc
mv -f .deps/c-interface-scm.Tpo .deps/c-interface-scm.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-sfs.o -MD -MP -MF .deps/c-interface-sfs.Tpo -c -o c-interface-sfs.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-sfs.cc
mv -f .deps/c-interface-sequence.Tpo .deps/c-interface-sequence.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-sharpen.o -MD -MP -MF .deps/c-interface-sharpen.Tpo -c -o c-interface-sharpen.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-sharpen.cc
mv -f .deps/c-interface-sfs.Tpo .deps/c-interface-sfs.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-superpose.o -MD -MP -MF .deps/c-interface-superpose.Tpo -c -o c-interface-superpose.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-superpose.cc
mv -f .deps/c-interface-sharpen.Tpo .deps/c-interface-sharpen.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-validate.o -MD -MP -MF .deps/c-interface-validate.Tpo -c -o c-interface-validate.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-validate.cc
mv -f .deps/c-interface-superpose.Tpo .deps/c-interface-superpose.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-view.o -MD -MP -MF .deps/c-interface-view.Tpo -c -o c-interface-view.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-view.cc
mv -f .deps/c-interface-view.Tpo .deps/c-interface-view.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-widgets.o -MD -MP -MF .deps/c-interface-widgets.Tpo -c -o c-interface-widgets.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-widgets.cc
mv -f .deps/c-interface-validate.Tpo .deps/c-interface-validate.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-waters.o -MD -MP -MF .deps/c-interface-waters.Tpo -c -o c-interface-waters.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-waters.cc
mv -f .deps/c-interface-widgets.Tpo .deps/c-interface-widgets.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-waters-gui.o -MD -MP -MF .deps/c-interface-waters-gui.Tpo -c -o c-interface-waters-gui.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-waters-gui.cc
mv -f .deps/c-interface-waters.Tpo .deps/c-interface-waters.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface.o -MD -MP -MF .deps/c-interface.Tpo -c -o c-interface.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface.cc
mv -f .deps/c-interface-waters-gui.Tpo .deps/c-interface-waters-gui.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT c-interface-test.o -MD -MP -MF .deps/c-interface-test.Tpo -c -o c-interface-test.o /home/ccb63/Downloads/devtools/checkout/coot/src/c-interface-test.cc
mv -f .deps/c-interface-test.Tpo .deps/c-interface-test.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT cc-interface-alignment.o -MD -MP -MF .deps/cc-interface-alignment.Tpo -c -o cc-interface-alignment.o /home/ccb63/Downloads/devtools/checkout/coot/src/cc-interface-alignment.cc
mv -f .deps/c-interface.Tpo .deps/c-interface.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT cc-interface-png.o -MD -MP -MF .deps/cc-interface-png.Tpo -c -o cc-interface-png.o /home/ccb63/Downloads/devtools/checkout/coot/src/cc-interface-png.cc
mv -f .deps/cc-interface-alignment.Tpo .deps/cc-interface-alignment.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT cc-interface-user-defined-atom-colours.o -MD -MP -MF .deps/cc-interface-user-defined-atom-colours.Tpo -c -o cc-interface-user-defined-atom-colours.o /home/ccb63/Downloads/devtools/checkout/coot/src/cc-interface-user-defined-atom-colours.cc
mv -f .deps/cc-interface-png.Tpo .deps/cc-interface-png.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused  -MT callbacks.o -MD -MP -MF .deps/callbacks.Tpo -c -o callbacks.o /home/ccb63/Downloads/devtools/checkout/coot/src/callbacks.c
/home/ccb63/Downloads/devtools/checkout/coot/src/callbacks.c: In function ‘on_cif_dictionary_filechooserdialog1_response’:
/home/ccb63/Downloads/devtools/checkout/coot/src/callbacks.c:10936:7: warning: variable ‘new_compid_idx’ set but not used [-Wunused-but-set-variable]
   int new_compid_idx;
       ^
/home/ccb63/Downloads/devtools/checkout/coot/src/callbacks.c: In function ‘on_curlew1_activate’:
/home/ccb63/Downloads/devtools/checkout/coot/src/callbacks.c:12731:3: warning: implicit declaration of function ‘curlew’ [-Wimplicit-function-declaration]
   curlew();
   ^
mv -f .deps/cc-interface-user-defined-atom-colours.Tpo .deps/cc-interface-user-defined-atom-colours.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT cfc.o -MD -MP -MF .deps/cfc.Tpo -c -o cfc.o /home/ccb63/Downloads/devtools/checkout/coot/src/cfc.cc
mv -f .deps/callbacks.Tpo .deps/callbacks.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT change-dir.o -MD -MP -MF .deps/change-dir.Tpo -c -o change-dir.o /home/ccb63/Downloads/devtools/checkout/coot/src/change-dir.cc
mv -f .deps/change-dir.Tpo .deps/change-dir.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT cmtz-interface.o -MD -MP -MF .deps/cmtz-interface.Tpo -c -o cmtz-interface.o /home/ccb63/Downloads/devtools/checkout/coot/src/cmtz-interface.cc
mv -f .deps/cmtz-interface.Tpo .deps/cmtz-interface.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT command-line.o -MD -MP -MF .deps/command-line.Tpo -c -o command-line.o /home/ccb63/Downloads/devtools/checkout/coot/src/command-line.cc
mv -f .deps/cfc.Tpo .deps/cfc.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT command-line-extern.o -MD -MP -MF .deps/command-line-extern.Tpo -c -o command-line-extern.o /home/ccb63/Downloads/devtools/checkout/coot/src/command-line-extern.cc
mv -f .deps/command-line.Tpo .deps/command-line.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-colour.o -MD -MP -MF .deps/coot-colour.Tpo -c -o coot-colour.o /home/ccb63/Downloads/devtools/checkout/coot/src/coot-colour.cc
mv -f .deps/coot-colour.Tpo .deps/coot-colour.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-align.o -MD -MP -MF .deps/coot-align.Tpo -c -o coot-align.o /home/ccb63/Downloads/devtools/checkout/coot/src/coot-align.cc
mv -f .deps/coot-align.Tpo .deps/coot-align.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wunused  -MT coot-glue-gtk2.o -MD -MP -MF .deps/coot-glue-gtk2.Tpo -c -o coot-glue-gtk2.o /home/ccb63/Downloads/devtools/checkout/coot/src/coot-glue-gtk2.c
mv -f .deps/coot-glue-gtk2.Tpo .deps/coot-glue-gtk2.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-glue-gtk2-python.o -MD -MP -MF .deps/coot-glue-gtk2-python.Tpo -c -o coot-glue-gtk2-python.o /home/ccb63/Downloads/devtools/checkout/coot/src/coot-glue-gtk2-python.cc
mv -f .deps/coot-glue-gtk2-python.Tpo .deps/coot-glue-gtk2-python.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-hydrogens.o -MD -MP -MF .deps/coot-hydrogens.Tpo -c -o coot-hydrogens.o /home/ccb63/Downloads/devtools/checkout/coot/src/coot-hydrogens.cc
mv -f .deps/command-line-extern.Tpo .deps/command-line-extern.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot_pythonmodule.o -MD -MP -MF .deps/coot_pythonmodule.Tpo -c -o coot_pythonmodule.o /home/ccb63/Downloads/devtools/checkout/coot/src/coot_pythonmodule.cc
mv -f .deps/coot_pythonmodule.Tpo .deps/coot_pythonmodule.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT coot-setup-python.o -MD -MP -MF .deps/coot-setup-python.Tpo -c -o coot-setup-python.o /home/ccb63/Downloads/devtools/checkout/coot/src/coot-setup-python.cc
mv -f .deps/coot-hydrogens.Tpo .deps/coot-hydrogens.Po
swig -o coot_wrap_guile_pre.cc -DCOOT_USE_GTK2_INTERFACE -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE  -DUSE_LIBCURL -I/home/ccb63/Downloads/devtools/checkout/coot/src -I/home/ccb63/Downloads/devtools/checkout/coot -guile -c++  /home/ccb63/Downloads/devtools/checkout/coot/src/coot.i
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT drag-and-drop.o -MD -MP -MF .deps/drag-and-drop.Tpo -c -o drag-and-drop.o /home/ccb63/Downloads/devtools/checkout/coot/src/drag-and-drop.cc
mv -f .deps/coot-setup-python.Tpo .deps/coot-setup-python.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT draw-generic-display-objects.o -MD -MP -MF .deps/draw-generic-display-objects.Tpo -c -o draw-generic-display-objects.o /home/ccb63/Downloads/devtools/checkout/coot/src/draw-generic-display-objects.cc
mv -f .deps/drag-and-drop.Tpo .deps/drag-and-drop.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT flev.o -MD -MP -MF .deps/flev.Tpo -c -o flev.o /home/ccb63/Downloads/devtools/checkout/coot/src/flev.cc
mv -f .deps/draw-generic-display-objects.Tpo .deps/draw-generic-display-objects.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT generic-objects.o -MD -MP -MF .deps/generic-objects.Tpo -c -o generic-objects.o /home/ccb63/Downloads/devtools/checkout/coot/src/generic-objects.cc
mv -f .deps/generic-objects.Tpo .deps/generic-objects.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT geometry-graphs.o -MD -MP -MF .deps/geometry-graphs.Tpo -c -o geometry-graphs.o /home/ccb63/Downloads/devtools/checkout/coot/src/geometry-graphs.cc
mv -f .deps/flev.Tpo .deps/flev.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT get-residue.o -MD -MP -MF .deps/get-residue.Tpo -c -o get-residue.o /home/ccb63/Downloads/devtools/checkout/coot/src/get-residue.cc
mv -f .deps/get-residue.Tpo .deps/get-residue.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT get-monomer.o -MD -MP -MF .deps/get-monomer.Tpo -c -o get-monomer.o /home/ccb63/Downloads/devtools/checkout/coot/src/get-monomer.cc
mv -f .deps/geometry-graphs.Tpo .deps/geometry-graphs.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT globjects.o -MD -MP -MF .deps/globjects.Tpo -c -o globjects.o /home/ccb63/Downloads/devtools/checkout/coot/src/globjects.cc
mv -f .deps/get-monomer.Tpo .deps/get-monomer.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT globularize.o -MD -MP -MF .deps/globularize.Tpo -c -o globularize.o /home/ccb63/Downloads/devtools/checkout/coot/src/globularize.cc
mv -f .deps/globjects.Tpo .deps/globjects.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT graphics-info.o -MD -MP -MF .deps/graphics-info.Tpo -c -o graphics-info.o /home/ccb63/Downloads/devtools/checkout/coot/src/graphics-info.cc
mv -f .deps/globularize.Tpo .deps/globularize.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT graphics-info-defines.o -MD -MP -MF .deps/graphics-info-defines.Tpo -c -o graphics-info-defines.o /home/ccb63/Downloads/devtools/checkout/coot/src/graphics-info-defines.cc
mv -f .deps/graphics-info-defines.Tpo .deps/graphics-info-defines.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT graphics-info-graphs.o -MD -MP -MF .deps/graphics-info-graphs.Tpo -c -o graphics-info-graphs.o /home/ccb63/Downloads/devtools/checkout/coot/src/graphics-info-graphs.cc
mv -f .deps/graphics-info.Tpo .deps/graphics-info.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT graphics-info-gui.o -MD -MP -MF .deps/graphics-info-gui.Tpo -c -o graphics-info-gui.o /home/ccb63/Downloads/devtools/checkout/coot/src/graphics-info-gui.cc
mv -f .deps/graphics-info-graphs.Tpo .deps/graphics-info-graphs.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT graphics-info-modelling.o -MD -MP -MF .deps/graphics-info-modelling.Tpo -c -o graphics-info-modelling.o /home/ccb63/Downloads/devtools/checkout/coot/src/graphics-info-modelling.cc
mv -f .deps/graphics-info-gui.Tpo .deps/graphics-info-gui.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT graphics-info-navigation.o -MD -MP -MF .deps/graphics-info-navigation.Tpo -c -o graphics-info-navigation.o /home/ccb63/Downloads/devtools/checkout/coot/src/graphics-info-navigation.cc
mv -f .deps/graphics-info-modelling.Tpo .deps/graphics-info-modelling.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT graphics-info-navigation-gtk1.o -MD -MP -MF .deps/graphics-info-navigation-gtk1.Tpo -c -o graphics-info-navigation-gtk1.o /home/ccb63/Downloads/devtools/checkout/coot/src/graphics-info-navigation-gtk1.cc
mv -f .deps/graphics-info-navigation-gtk1.Tpo .deps/graphics-info-navigation-gtk1.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16    -DUSE_SQLITE3   -I/opt/xtal/ccp4-7.0-linux64/include                   -DPKGDATADIR='"/opt/xtal/ccp4-7.0-linux64/share/coot"' -DPACKAGE_LOCALE_DIR='"/opt/xtal/ccp4-7.0-linux64/share/coot/locale"' -DPKGPYTHONDIR='"/opt/xtal/ccp4-7.0-linux64/lib/python2.7/site-packages/coot"' -DDATADIR='"/opt/xtal/ccp4-7.0-linux64/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-centos-5-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"CCP4, Oxfordshire"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/opt/xtal/ccp4-7.0-linux64/include  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYTHON -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -I/opt/xtal/ccp4-7.0-linux64/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL  -O3 -fno-strict-aliasing -pipe -mtune=core2 -Wall -Wno-unused  -MT graphics-info-navigation-gtk2.o -MD -MP -MF .deps/graphics-info-navigation-gtk2.Tpo -c -o graphics-info-navigation-gtk2.o /home/ccb63/Downloads/devtools/checkout/coot/src/graphics-info-navigation-gtk2.cc
mv -f .deps/graphics-info-navigation.Tpo .deps/graphics-info-navigation.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9.2\" -DPACKAGE_STRING=\"coot\ 0.8.9.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_BOOST=/\*\*/ -DHAVE_PYTHON=\"2.7\" -DHAVE_BOOST_PYTHON=/\*\*/ -I. -I/home/ccb63/Downloads/devtools/checkout/coot/src  -I/home/ccb63/Downloads/devtools/checkout/coot -I/opt/xtal/ccp4-7.0-linux64/include/rdkit  -DMAKE_ENHANCED_LIGAND_TOOLS -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK  -I/opt/xtal/ccp4-7.0-linux64/include  -pthread  -DHAVE_GNOME_CANVAS -pthread -I/opt/xtal/ccp4-7.0-linux64/include/libgnomecanvas-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gail-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/libart-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtkglext-1.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtkglext-1.0/include -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16 -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0    -DHAVE_GOOCANVAS -I/opt/xtal/ccp4-7.0-linux64/include/goocanvas-1.0 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/gtk-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/atk-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/cairo -I/opt/xtal/ccp4-7.0-linux64/include/gdk-pixbuf-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/pango-1.0 -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/glib-2.0/include -I/opt/xtal/ccp4-7.0-linux64/include/pixman-1 -I/opt/xtal/ccp4-7.0-linux64/include/freetype2 -I/opt/xtal/ccp4-7.0-linux64/include/libpng16  -DHAVE_SSMLIB -DMMDB_HAS_LINK_DISTANCE  -I/opt/xtal/ccp4-7.0-linux64/include -DCLIPPER_HAS_TOP8000 -pthread -I/opt/xtal/ccp4-7.0-linux64/include/pygtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/include/gtk-2.0 -I/opt/xtal/ccp4-7.0-linux64/lib/libffi-3.0.13/include -I/opt/xtal/ccp4-7.0-linux64/include/glib-2.0 -I/opt/xt