mrbump Build Log

Checking out mrbump 2019-08-01 12:49:51.169
bzr update
+N  data/pdbALL.txt
+N  mrbump/building/MRBUMP_coot.py
+N  mrbump/ccp4/MRBUMP_phaserMODES.py
+N  mrbump/mr/phaserQuick.py
+N  yapf.style
 M  data/pdb100.txt
 M  data/pdb50.txt
 M  data/pdb70.txt
 M  data/pdb90.txt
 M  data/pdb95.txt
 M  mrbump/building/MRBUMP_Shelxe.py
 M  mrbump/cluster/cluster_run.py
 M  mrbump/cluster/refmacEXE.py
 M  mrbump/file_info/MRBUMP_target_info.py
 M  mrbump/file_info/MTZ_parse.py
 M  mrbump/initialisation/MRBUMP_initialise.py
 M  mrbump/initialisation/MRBUMP_keywords.py
 M  mrbump/initialisation/MRBUMP_master.py
 M  mrbump/modelling/Model.py
 M  mrbump/modelling/PDBClip.py
 M  mrbump/mr/MRBUMP_MR.py
 M  mrbump/mr/MRBUMP_Molrep.py
 M  mrbump/mr/MRBUMP_Phaser.py
 M  mrbump/output/MRBUMP_printTable.py
 M  mrbump/output/MRBUMP_writebest.py
 M  mrbump/output/Write_MR_results.py
 M  mrbump/output/printTable.py
 M  mrbump/parsers/parse_phaser.py
 M  mrbump/parsers/parse_shelxe.py
 M  mrbump/seq_align/MRBUMP_HH.py
 M  mrbump/seq_align/MRBUMP_phmmer.py
 M  mrbump/structures/Matches.py
 M  mrbump/structures/Model_struct.py
 M  mrbump/structures/Solution_struct.py
 M  mrbump/tools/MRBUMP_utils.py
 M  mrbump/tools/Model_Queue.py
 M  mrbump/tools/makeSeqDB.py
 M  mrbump/tools/make_dictionary.py
 M  mrbump/version.py
 M  tests/mb_util.py
 M  tests/test_init.py
 M  tests/test_mr.py
 M  tests/test_seq_matches.py
All changes applied successfully.
Updated to revision 718 of branch bzr+http://fg.oisin.rc-harwell.ac.uk/bzr/series-70/mrbump
Configuring mrbump 2019-08-01 12:51:05.918
cmake -DCMAKE_INSTALL_PREFIX='/opt/xtal/ccp4-7.0-linux64' -DLIB_INSTALL_DIR='/opt/xtal/ccp4-7.0-linux64/lib' -Dlibdir='/opt/xtal/ccp4-7.0-linux64/lib'   -DBUILD_SHARED_LIBS=ON -D CMAKE_SKIP_RPATH=1 /home/ccb63/Downloads/devtools/checkout/mrbump
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    BUILD_SHARED_LIBS
    LIB_INSTALL_DIR
    libdir


-- Build files have been written to: /home/ccb63/Downloads/devtools/builddir/mrbump
Building mrbump 2019-08-01 12:51:09.035
make -j 1
Installing mrbump 2019-08-01 12:51:09.132
make -j 1 install DESTDIR=/opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump
Install the project...
-- Install configuration: ""
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/dispatchers
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/dispatchers/chainsaw.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/dispatchers/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/dispatchers/molrep.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/dispatchers/phaser_sculptor.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/dev
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/dev/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/dev/Developer.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/parsers
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/parsers/parse_refmac.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/parsers/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/parsers/parse_arpwarp.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/parsers/parse_buccaneer.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/parsers/parse_shelxe.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/parsers/parse_molrep.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/parsers/parse_phaser.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/__main__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/mr
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/mr/MRBUMP_Amore.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/mr/MRBUMP_Molrep.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/mr/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/mr/Ensemble.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/mr/MRBUMP_Refmac.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/mr/MRBUMP_MR.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/mr/MRBUMP_Phaser.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/mr/phaserQuick.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/building
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/building/Phase_improve.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/building/MRBUMP_coot.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/building/MRBUMP_ARPwARP.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/building/MRBUMP_Buccaneer.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/building/MRBUMP_Acorn.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/building/mrbump_buccaneer_pipeline.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/building/MRBUMP_Shelxe.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/building/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/building/MRBUMP_Ecalc.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/phasing
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/phasing/MRBUMP_SHELXCDE_BUCCANEER.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/phasing/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/phasing/MRBUMP_SHELXCDE.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/initialisation
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/initialisation/MRBUMP_master.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/initialisation/MRBUMP_update_DB.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/initialisation/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/initialisation/MRBUMP_parse_cmd.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/initialisation/MRBUMP_keywords.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/initialisation/MRBUMP_XML_parse.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/initialisation/MRBUMP_environment.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/initialisation/MRBUMP_initialise.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/initialisation/MRBUMP_check_dependencies.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/version.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/makeSeqDB.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/MRBUMP_utils.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/getPDB.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/CCP4_Submit.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/MRBUMP_Gnuplot.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Get_MR_sum.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/split_NMR.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Matthews_coef.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/setrefineMTZ.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/smartie.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Get_sequence_DB.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/convert_SG.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Loggraph.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Scan_path.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/rtPDB.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/MRBUMP_phs2mtz.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Fasta_search.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Write_seq_align.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/mol_weight.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/MRBUMP_getseq.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Model_Queue.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Sort_dict.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Web_test.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Dummy_Run.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/pdb_edit.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Cleanup.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/Cluster_Submit.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/tools/make_dictionary.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align/MRBUMP_HH.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align/simpleSeqID.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align/MRBUMP_T_COFFEE.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align/MRBUMP_CLUSTALW.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align/MRBUMP_gesamt.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align/seq_score.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align/MRBUMP_phmmer.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align/MRBUMP_MAFFT.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align/Align_score.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align/separate.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/seq_align/MRBUMP_PROBCONS.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/structures
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/structures/Align_structure.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/structures/Model_struct.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/structures/Matches.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/structures/SCOP_search.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/structures/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/structures/Get_SCOP.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/structures/MRBUMP_HHpred.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/structures/Solution_struct.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/file_info
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/file_info/Fasta_parse.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/file_info/MTZ_info.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/file_info/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/file_info/PDB_info.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/file_info/MRBUMP_target_info.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/file_info/PDB_download.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/file_info/Nmol_calc.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/file_info/MTZ_parse.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/misc.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/modelling
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/modelling/Model.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/modelling/PISA.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/modelling/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/modelling/Model_prep_scoring.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/modelling/PDBClip.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/modelling/PQS.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/cluster
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/cluster/phaserEXE.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/cluster/combinedEXE.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/cluster/refmacEXE.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/cluster/cluster_run.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/cluster/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/cluster/molrepEXE.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/cluster/pdbtools.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/output
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/output/Write_MR_results.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/output/WriteLogfile.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/output/Write_Search_results.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/output/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/output/printTable.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/output/MRBUMP_printTable.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/output/makeXML.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/output/WriteXML.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/output/MRBUMP_loggraphs.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/output/Struct_dump.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/output/MRBUMP_writebest.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_buccaneer_ref.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_pdbmerge.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_chainsaw.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_acorn.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_reindex.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_freerflag.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_pdbset.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/__init__.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_ctruncate.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_buccaneer.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_refmac.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_amore.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_cad.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_unique.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_pdbcur.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_ecalc.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_cpirate.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/lib/py2/mrbump/ccp4/MRBUMP_phaserMODES.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/dispatchers
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/dispatchers/chainsaw.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/dispatchers/molrep.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/dispatchers/phaser_sculptor.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/utils
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/utils/sgeJson.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/utils/README.txt
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/utils/makeReducedPDBseq.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/dev
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/dev/Developer.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/web_template
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/web_template/cclrc-logo.jpg
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/web_template/results.html
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/web_template/ccp4.gif
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/web_template/slide_bar.gif
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/web_template/ehtpx-logo.jpg
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/parsers
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/parsers/parse_refmac.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/parsers/parse_arpwarp.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/parsers/parse_buccaneer.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/parsers/parse_shelxe.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/parsers/parse_molrep.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/parsers/parse_phaser.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/mr
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/mr/MRBUMP_Amore.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/mr/MRBUMP_Molrep.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/mr/Ensemble.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/mr/MRBUMP_Refmac.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/mr/MRBUMP_MR.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/mr/MRBUMP_Phaser.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/building
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/building/Phase_improve.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/building/MRBUMP_ARPwARP.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/building/MRBUMP_Buccaneer.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/building/MRBUMP_Acorn.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/building/mrbump_buccaneer_pipeline.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/building/MRBUMP_Shelxe.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/building/MRBUMP_Ecalc.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/phasing
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/phasing/MRBUMP_SHELXCDE_BUCCANEER.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/phasing/MRBUMP_SHELXCDE.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/perl
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/perl/ssm.pl
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/initialisation
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/initialisation/MRBUMP_master.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/initialisation/MRBUMP_update_DB.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/initialisation/MRBUMP_parse_cmd.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/initialisation/MRBUMP_keywords.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/initialisation/MRBUMP_XML_parse.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/initialisation/MRBUMP_environment.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/initialisation/MRBUMP_initialise.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/initialisation/MRBUMP_check_dependencies.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/makeSeqDB.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/MRBUMP_utils.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/getPDB.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/CCP4_Submit.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/MRBUMP_Gnuplot.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Get_MR_sum.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/split_NMR.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Matthews_coef.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/setrefineMTZ.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/smartie.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Get_sequence_DB.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/convert_SG.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Loggraph.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Scan_path.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/rtPDB.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/MRBUMP_phs2mtz.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Fasta_search.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Write_seq_align.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/mol_weight.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/MRBUMP_getseq.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Model_Queue.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Sort_dict.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Web_test.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Dummy_Run.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/pdb_edit.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Cleanup.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/Cluster_Submit.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tools/make_dictionary.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/arpwarp3.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/arpwarp2.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/arpwarp.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/phaser1.pdb
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/shelxe_x4.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/shelxe.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/shelxe_x.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/phaser2.pdb
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/shelxe_noCC.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/shelxe_x2.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/phaserMemErr.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/phaser1.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/shelxe_x5.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/phaser_generr.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/buccaneer.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/refmac.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/phaserFatalErr.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/phaser2.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/shelxe_x3.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/tests/molrep.log
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/seq_align
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/seq_align/MRBUMP_HH.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/seq_align/simpleSeqID.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/seq_align/MRBUMP_T_COFFEE.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/seq_align/MRBUMP_CLUSTALW.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/seq_align/MRBUMP_gesamt.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/seq_align/seq_score.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/seq_align/MRBUMP_phmmer.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/seq_align/MRBUMP_MAFFT.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/seq_align/Align_score.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/seq_align/separate.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/seq_align/MRBUMP_PROBCONS.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/structures
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/structures/Align_structure.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/structures/Model_struct.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/structures/Matches.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/structures/SCOP_search.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/structures/Get_SCOP.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/structures/MRBUMP_HHpred.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/structures/Solution_struct.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/file_info
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/file_info/Fasta_parse.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/file_info/MTZ_info.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/file_info/PDB_info.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/file_info/MRBUMP_target_info.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/file_info/PDB_download.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/file_info/Nmol_calc.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/file_info/MTZ_parse.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/modelling
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/modelling/Model.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/modelling/PISA.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/modelling/Model_prep_scoring.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/modelling/PDBClip.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/modelling/PQS.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/cluster
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/cluster/phaserEXE.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/cluster/combinedEXE.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/cluster/refmacEXE.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/cluster/cluster_run.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/cluster/molrepEXE.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/cluster/pdbtools.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/output
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-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/output/WriteLogfile.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/output/Write_Search_results.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/output/printTable.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/output/MRBUMP_printTable.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/output/makeXML.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/output/WriteXML.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/output/MRBUMP_loggraphs.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/output/Struct_dump.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/output/MRBUMP_writebest.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_buccaneer_ref.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_pdbmerge.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_chainsaw.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_acorn.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_reindex.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_freerflag.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_pdbset.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_ctruncate.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_buccaneer.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_refmac.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_amore.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_cad.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_unique.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_pdbcur.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_ecalc.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/include/ccp4/MRBUMP_cpirate.py
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/data
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/data/pdb95.txt
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/data/pdb100.txt
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/data/pdb50.txt
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/data/pdb70.txt
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/data/pdbALL.txt
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/data/scop_list.txt
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/share/mrbump/data/pdb90.txt
-- Installing: /opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump/opt/xtal/ccp4-7.0-linux64/bin/mrbump
Moving temporary DESTDIR u'/opt/xtal/ccp4-7.0-linux64/_jhbuild/root-mrbump' into build prefix
Install complete: 305 files copied
Succeeded 2019-08-01 12:51:18.929