pointless Build Log

Checking out pointless 2019-05-07 13:21:49.193
bzr update
Tree is up to date at revision 250 of branch bzr+http://fg.oisin.rc-harwell.ac.uk/bzr/series-70/pointless
Configuring pointless 2019-05-07 13:22:42.008
cmake -DCMAKE_INSTALL_PREFIX='/opt/xtal/ccp4-7.0-linux32' -DLIB_INSTALL_DIR='/opt/xtal/ccp4-7.0-linux32/lib' -Dlibdir='/opt/xtal/ccp4-7.0-linux32/lib'   -DBUILD_SHARED_LIBS=ON -D CMAKE_SKIP_RPATH=1 /home/ccb63/Downloads/devtools/checkout/pointless
-- Looking for mmdb2/mmdb_defs.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libmmdb2.so  
-- Looking for ccp4/ccp4_general.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libccp4c.so  
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Looking for clipper/clipper.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-core.so  
-- FFTW2 libraries - /opt/xtal/ccp4-7.0-linux32/lib/libfftw.so
--                 - /opt/xtal/ccp4-7.0-linux32/lib/librfftw.so
-- FFTW2 header directory - /opt/xtal/ccp4-7.0-linux32/include
-- Performing Test _LINKING_WITH_CLIPPER_CORE
-- Performing Test _LINKING_WITH_CLIPPER_CORE - Success
-- Looking for clipper/clipper-mmdb.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-mmdb.so  
-- Looking for clipper/clipper-minimol.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-minimol.so  
-- Looking for clipper/clipper-contrib.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-contrib.so  
-- Looking for clipper/clipper-ccp4.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-ccp4.so  
-- Looking for cctbx/crystal/symmetry.h - /opt/xtal/ccp4-7.0-linux32/include/cctbx
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libcctbx.so  
-- CCP4 include directory: /opt/xtal/ccp4-7.0-linux32/include;/opt/xtal/ccp4-7.0-linux32/include/cctbx
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    libdir


-- Build files have been written to: /home/ccb63/Downloads/devtools/builddir/pointless
Building pointless 2019-05-07 13:22:46.426
make -j 2
Scanning dependencies of target common
[  0%] Building CXX object CMakeFiles/common.dir/latsym.cpp.o
[  1%] Building CXX object CMakeFiles/common.dir/pointgroup.cpp.o
[  2%] Building CXX object CMakeFiles/common.dir/pgscore.cpp.o
[  3%] Building CXX object CMakeFiles/common.dir/scsignificance.cpp.o
[  4%] Building CXX object CMakeFiles/common.dir/getsubgroups.cpp.o
[  5%] Building CXX object CMakeFiles/common.dir/Output.cpp.o
[  6%] Building CXX object CMakeFiles/common.dir/probfunctions.cpp.o
[  7%] Building CXX object CMakeFiles/common.dir/interpretcommandline.cpp.o
[  8%] Building CXX object CMakeFiles/common.dir/cctbx_utils.cpp.o
[  9%] Building CXX object CMakeFiles/common.dir/CCP4base.cpp.o
[ 10%] Building CXX object CMakeFiles/common.dir/jiffy.cpp.o
[ 11%] Building CXX object CMakeFiles/common.dir/spacegroupreindex.cpp.o
[ 25%] Built target common
Scanning dependencies of target othercell
[ 26%] Building CXX object CMakeFiles/othercell.dir/othercell.cpp.o
Scanning dependencies of target pointless
[ 27%] Building CXX object CMakeFiles/pointless.dir/pointless.cpp.o
Linking CXX executable othercell
[ 27%] Built target othercell
[ 28%] Building CXX object CMakeFiles/pointless.dir/cellgroup.cpp.o
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Linking CXX executable pointless
[100%] Built target pointless
Installing pointless 2019-05-07 13:28:04.562
make -j 2 install DESTDIR=/opt/xtal/ccp4-7.0-linux32/_jhbuild/root-pointless
[ 25%] Built target common
[ 26%] Built target othercell
[100%] Built target pointless
Install the project...
-- Install configuration: ""
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-pointless/opt/xtal/ccp4-7.0-linux32/bin/pointless
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-pointless/opt/xtal/ccp4-7.0-linux32/bin/othercell
Moving temporary DESTDIR u'/opt/xtal/ccp4-7.0-linux32/_jhbuild/root-pointless' into build prefix
0 files remaining from previous build
Install complete: 2 files copied
Succeeded 2019-05-07 13:28:09.148