blend Build Log

Checking out blend 2019-05-07 13:38:22.678
bzr pull bzr+ssh://ccp4um@fg.oisin.rc-harwell.ac.uk/var/lib/gforge/chroot/scmrepos/bzr/series-70/blend
No revisions or tags to pull.
Configuring blend 2019-05-07 13:38:23.968
cmake -DCMAKE_INSTALL_PREFIX='/opt/xtal/ccp4-7.0-linux32' -DLIB_INSTALL_DIR='/opt/xtal/ccp4-7.0-linux32/lib' -Dlibdir='/opt/xtal/ccp4-7.0-linux32/lib'   -DBUILD_SHARED_LIBS=ON -D CMAKE_SKIP_RPATH=1 /home/ccb63/Downloads/devtools/checkout/blend
-- Looking for mmdb2/mmdb_defs.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libmmdb2.so  
-- Looking for ccp4/ccp4_general.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libccp4c.so  
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Looking for clipper/clipper.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-core.so  
-- FFTW2 libraries - /opt/xtal/ccp4-7.0-linux32/lib/libfftw.so
--                 - /opt/xtal/ccp4-7.0-linux32/lib/librfftw.so
-- FFTW2 header directory - /opt/xtal/ccp4-7.0-linux32/include
-- Performing Test _LINKING_WITH_CLIPPER_CORE
-- Performing Test _LINKING_WITH_CLIPPER_CORE - Success
-- Looking for clipper/clipper-mmdb.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-mmdb.so  
-- Looking for clipper/clipper-minimol.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-minimol.so  
-- Looking for clipper/clipper-contrib.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-contrib.so  
-- Looking for clipper/clipper-ccp4.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-ccp4.so  
-- Looking for cctbx/crystal/symmetry.h - /opt/xtal/ccp4-7.0-linux32/include/cctbx
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libcctbx.so  
-- CCP4 include directory: /opt/xtal/ccp4-7.0-linux32/include;/opt/xtal/ccp4-7.0-linux32/include/cctbx
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    libdir


-- Build files have been written to: /home/ccb63/Downloads/devtools/builddir/blend
Building blend 2019-05-07 13:38:26.361
make -j 2
Scanning dependencies of target blend
[  1%] Building CXX object CMakeFiles/blend.dir/src/Output.cpp.o
[  2%] Building CXX object CMakeFiles/blend.dir/src/jiffy.cpp.o
[  3%] Building CXX object CMakeFiles/blend.dir/src/writeunmergedmtz.cpp.o
[  4%] Building CXX object CMakeFiles/blend.dir/src/cellgroup.cpp.o
[  5%] Building CXX object CMakeFiles/blend.dir/src/pointgroup.cpp.o
[  7%] Building CXX object CMakeFiles/blend.dir/src/globalcontrols.cpp.o
[  8%] Building CXX object CMakeFiles/blend.dir/src/latsym.cpp.o
[  9%] Building CXX object CMakeFiles/blend.dir/src/getsubgroups.cpp.o
[ 10%] Building CXX object CMakeFiles/blend.dir/src/probfunctions.cpp.o
[ 11%] Building CXX object CMakeFiles/blend.dir/src/CCP4base.cpp.o
[ 12%] Building CXX object CMakeFiles/blend.dir/src/cctbx_utils.cpp.o
[ 14%] Building CXX object CMakeFiles/blend.dir/src/centre.cpp.o
[ 15%] Building CXX object CMakeFiles/blend.dir/src/copymergedmtz.cpp.o
[ 16%] Building CXX object CMakeFiles/blend.dir/src/hkl_merged_list.cpp.o
[ 17%] Building CXX object CMakeFiles/blend.dir/src/intensitystatistics.cpp.o
[ 18%] Building CXX object CMakeFiles/blend.dir/src/interpretcommandline.cpp.o
[ 20%] Building CXX object CMakeFiles/blend.dir/src/keywords.cpp.o
[ 21%] Building CXX object CMakeFiles/blend.dir/src/pgscore.cpp.o
[ 22%] Building CXX object CMakeFiles/blend.dir/src/scsignificance.cpp.o
[ 23%] Building CXX object CMakeFiles/blend.dir/src/setscores.cpp.o
[ 24%] Building CXX object CMakeFiles/blend.dir/src/spacegroupreindex.cpp.o
[ 25%] Building CXX object CMakeFiles/blend.dir/src/sysabstest.cpp.o
[ 27%] Building CXX object CMakeFiles/blend.dir/src/outputunmergeddata.cpp.o
[ 28%] Building CXX object CMakeFiles/blend.dir/src/printthings.cpp.o
[ 29%] Building CXX object CMakeFiles/blend.dir/src/readallhklinfiles.cpp.o
[ 30%] Building CXX object CMakeFiles/blend.dir/src/sysabszones.cpp.o
[ 31%] Building CXX object CMakeFiles/blend.dir/src/sysabsstats.cpp.o
[ 32%] Building CXX object CMakeFiles/blend.dir/src/makehkl_listscompatible.cpp.o
[ 34%] Building CXX object CMakeFiles/blend.dir/src/testlauegroup.cpp.o
[ 35%] Building CXX object CMakeFiles/blend.dir/src/normaliseunmerge.cpp.o
[ 36%] Building CXX object CMakeFiles/blend.dir/src/getCCsigfac.cpp.o
[ 37%] Building CXX object CMakeFiles/blend.dir/src/testindex.cpp.o
[ 38%] Building CXX object CMakeFiles/blend.dir/src/pointless.cpp.o
[ 40%] Building CXX object CMakeFiles/blend.dir/src/choosesolution.cpp.o
[ 41%] Building CXX object CMakeFiles/blend.dir/src/twintest.cpp.o
Linking CXX executable blend
[100%] Built target blend
Installing blend 2019-05-07 13:41:15.323
make -j 2 install DESTDIR=/opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend
[100%] Built target blend
Install the project...
-- Install configuration: ""
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/bin/blend
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//python
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//python/ccp4_classes.py
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//python/xds_to_mtz_list.py
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//python/merge_clusters.py
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//python/j_baseClasses.py
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//python/ccp4_functions.py
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//python/create_file_for_BLEND.py
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//R
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//R/blend2.R
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//R/blend0.R
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//R/blend4.R
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//R/blend1.R
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend//R/blend3.R
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend/opt/xtal/ccp4-7.0-linux32/share/blend/license.txt
Moving temporary DESTDIR u'/opt/xtal/ccp4-7.0-linux32/_jhbuild/root-blend' into build prefix
0 files remaining from previous build
Install complete: 13 files copied
Succeeded 2019-05-07 13:41:18.134