aimless Build Log

Checking out aimless 2019-05-07 13:28:09.149
bzr pull bzr+ssh://ccp4um@fg.oisin.rc-harwell.ac.uk/var/lib/gforge/chroot/scmrepos/bzr/series-70/aimless
No revisions or tags to pull.
Configuring aimless 2019-05-07 13:28:10.817
cmake -DCMAKE_INSTALL_PREFIX='/opt/xtal/ccp4-7.0-linux32' -DLIB_INSTALL_DIR='/opt/xtal/ccp4-7.0-linux32/lib' -Dlibdir='/opt/xtal/ccp4-7.0-linux32/lib'   -DBUILD_SHARED_LIBS=ON -D CMAKE_SKIP_RPATH=1 /home/ccb63/Downloads/devtools/checkout/aimless
-- Looking for mmdb2/mmdb_defs.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libmmdb2.so  
-- Looking for ccp4/ccp4_general.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libccp4c.so  
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Looking for clipper/clipper.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-core.so  
-- FFTW2 libraries - /opt/xtal/ccp4-7.0-linux32/lib/libfftw.so
--                 - /opt/xtal/ccp4-7.0-linux32/lib/librfftw.so
-- FFTW2 header directory - /opt/xtal/ccp4-7.0-linux32/include
-- Performing Test _LINKING_WITH_CLIPPER_CORE
-- Performing Test _LINKING_WITH_CLIPPER_CORE - Success
-- Looking for clipper/clipper-mmdb.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-mmdb.so  
-- Looking for clipper/clipper-minimol.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-minimol.so  
-- Looking for clipper/clipper-contrib.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-contrib.so  
-- Looking for clipper/clipper-ccp4.h - /opt/xtal/ccp4-7.0-linux32/include
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libclipper-ccp4.so  
-- Looking for cctbx/crystal/symmetry.h - /opt/xtal/ccp4-7.0-linux32/include/cctbx
-- Found CCP4: /opt/xtal/ccp4-7.0-linux32/lib/libcctbx.so  
-- CCP4 include directory: /opt/xtal/ccp4-7.0-linux32/include;/opt/xtal/ccp4-7.0-linux32/include/cctbx
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp  
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    libdir


-- Build files have been written to: /home/ccb63/Downloads/devtools/builddir/aimless
Building aimless 2019-05-07 13:28:13.200
make -j 2
Scanning dependencies of target aimless
[  0%] Building CXX object CMakeFiles/aimless.dir/InputAll_aimless.cpp.o
[  1%] Building CXX object CMakeFiles/aimless.dir/aimless.cpp.o
[  2%] Building CXX object CMakeFiles/aimless.dir/analyseanom.cpp.o
[  3%] Building CXX object CMakeFiles/aimless.dir/analysesd.cpp.o
[  4%] Building CXX object CMakeFiles/aimless.dir/analyseoverlaps.cpp.o
[  4%] Building CXX object CMakeFiles/aimless.dir/anomdistribution.cpp.o
[  5%] Building CXX object CMakeFiles/aimless.dir/applyscales.cpp.o
[  6%] Building CXX object CMakeFiles/aimless.dir/foxholmes.cpp.o
[  7%] Building CXX object CMakeFiles/aimless.dir/halfdataset.cpp.o
[  8%] Building CXX object CMakeFiles/aimless.dir/initialscales.cpp.o
[  9%] Building CXX object CMakeFiles/aimless.dir/keywords_aimless.cpp.o
[  9%] Building CXX object CMakeFiles/aimless.dir/mergedlist.cpp.o
[ 10%] Building CXX object CMakeFiles/aimless.dir/optimisesdcorr.cpp.o
[ 11%] Building CXX object CMakeFiles/aimless.dir/plotfiles.cpp.o
[ 12%] Building CXX object CMakeFiles/aimless.dir/printing.cpp.o
[ 12%] Building CXX object CMakeFiles/aimless.dir/refinescale.cpp.o
[ 13%] Building CXX object CMakeFiles/aimless.dir/refinesdcorrection.cpp.o
[ 14%] Building CXX object CMakeFiles/aimless.dir/reject.cpp.o
[ 14%] Building CXX object CMakeFiles/aimless.dir/scalemodel.cpp.o
[ 15%] Building CXX object CMakeFiles/aimless.dir/scalerefine.cpp.o
[ 16%] Building CXX object CMakeFiles/aimless.dir/scalerefinefh.cpp.o
[ 17%] Building CXX object CMakeFiles/aimless.dir/scaletypes.cpp.o
[ 18%] Building CXX object CMakeFiles/aimless.dir/sdanalysis.cpp.o
[ 19%] Building CXX object CMakeFiles/aimless.dir/sdctypes.cpp.o
[ 19%] Building CXX object CMakeFiles/aimless.dir/sdmodel.cpp.o
[ 20%] Building CXX object CMakeFiles/aimless.dir/selectedobservations.cpp.o
[ 21%] Building CXX object CMakeFiles/aimless.dir/selectscalingreflections.cpp.o
[ 22%] Building CXX object CMakeFiles/aimless.dir/selectsdcorrreflections.cpp.o
[ 22%] Building CXX object CMakeFiles/aimless.dir/statistics.cpp.o
[ 23%] Building CXX object CMakeFiles/aimless.dir/summarystatistics.cpp.o
[ 24%] Building CXX object CMakeFiles/aimless.dir/tie.cpp.o
[ 25%] Building CXX object CMakeFiles/aimless.dir/writeoutputfiles.cpp.o
[ 26%] Building CXX object CMakeFiles/aimless.dir/writeunmerged.cpp.o
[ 26%] Building CXX object CMakeFiles/aimless.dir/optimisecombine.cpp.o
[ 27%] Building CXX object CMakeFiles/aimless.dir/tile.cpp.o
[ 28%] Building CXX object CMakeFiles/aimless.dir/anisotropy.cpp.o
[ 29%] Building CXX object CMakeFiles/aimless.dir/radiationdamageanalysis.cpp.o
[ 30%] Building CXX object CMakeFiles/aimless.dir/anisotropicmodel.cpp.o
[ 31%] Building CXX object CMakeFiles/aimless.dir/hkl_merge.cpp.o
[ 32%] Building CXX object CMakeFiles/aimless.dir/referencelist.cpp.o
[ 32%] Building CXX object CMakeFiles/aimless.dir/referencescalemodel.cpp.o
[ 33%] Building CXX object CMakeFiles/aimless.dir/refinereferencescale.cpp.o
[ 34%] Building CXX object CMakeFiles/aimless.dir/rejectbatches.cpp.o
[ 35%] Building CXX object CMakeFiles/aimless.dir/hessian.cpp.o
[ 36%] Building CXX object CMakeFiles/aimless.dir/comparesds.cpp.o
[ 37%] Building CXX object CMakeFiles/aimless.dir/batchgroup.cpp.o
[ 38%] Building CXX object CMakeFiles/aimless.dir/linearsdcorrection.cpp.o
[ 39%] Building CXX object CMakeFiles/aimless.dir/refinescaleref.cpp.o
[ 40%] Building CXX object CMakeFiles/aimless.dir/secondaryscalestats.cpp.o
[ 41%] Building CXX object CMakeFiles/aimless.dir/CCP4base.cpp.o
[ 42%] Building CXX object CMakeFiles/aimless.dir/Output.cpp.o
[ 43%] Building CXX object CMakeFiles/aimless.dir/cctbx_utils.cpp.o
[ 44%] Building CXX object CMakeFiles/aimless.dir/cellgroup.cpp.o
[ 45%] Building CXX object CMakeFiles/aimless.dir/columnlabels.cpp.o
[ 45%] Building CXX object CMakeFiles/aimless.dir/controls.cpp.o
[ 46%] Building CXX object CMakeFiles/aimless.dir/getsubgroups.cpp.o
[ 47%] Building CXX object CMakeFiles/aimless.dir/hkl_controls.cpp.o
[ 48%] Building CXX object CMakeFiles/aimless.dir/hkl_unmerge.cpp.o
[ 49%] Building CXX object CMakeFiles/aimless.dir/interpretcommandline.cpp.o
[ 50%] Building CXX object CMakeFiles/aimless.dir/jiffy.cpp.o
[ 51%] Building CXX object CMakeFiles/aimless.dir/latsym.cpp.o
[ 51%] Building CXX object CMakeFiles/aimless.dir/mtz_merge_io.cpp.o
[ 52%] Building CXX object CMakeFiles/aimless.dir/mtz_unmerge_io.cpp.o
[ 53%] Building CXX object CMakeFiles/aimless.dir/normalise.cpp.o
[ 54%] Building CXX object CMakeFiles/aimless.dir/observationstatuscontrol.cpp.o
[ 55%] Building CXX object CMakeFiles/aimless.dir/openinputfile.cpp.o
[ 56%] Building CXX object CMakeFiles/aimless.dir/pointgroup.cpp.o
[ 57%] Building CXX object CMakeFiles/aimless.dir/probfunctions.cpp.o
[ 58%] Building CXX object CMakeFiles/aimless.dir/spacegroupreindex.cpp.o
[ 59%] Building CXX object CMakeFiles/aimless.dir/runcorrelations.cpp.o
[ 60%] Building CXX object CMakeFiles/aimless.dir/MinLib/RefineBase.cc.o
[ 61%] Building CXX object CMakeFiles/aimless.dir/MinLib/RefineBase2.cc.o
[ 62%] Building CXX object CMakeFiles/aimless.dir/MinLib/Minimizer.cc.o
Linking CXX executable aimless
[100%] Built target aimless
Installing aimless 2019-05-07 13:33:34.601
make -j 2 install DESTDIR=/opt/xtal/ccp4-7.0-linux32/_jhbuild/root-aimless
[100%] Built target aimless
Install the project...
-- Install configuration: ""
-- Installing: /opt/xtal/ccp4-7.0-linux32/_jhbuild/root-aimless/opt/xtal/ccp4-7.0-linux32/bin/aimless
Moving temporary DESTDIR u'/opt/xtal/ccp4-7.0-linux32/_jhbuild/root-aimless' into build prefix
0 files remaining from previous build
Install complete: 1 files copied
Succeeded 2019-05-07 13:33:38.130